Evidence map›Paper›PMID 30691646›Full record

ArticleMethods in enzymology2019

Directed evolution studies of a thermophilic Type II-C Cas9.

Travis H Hand, Anuska Das, Hong Li

Abstract read
In one paragraph

Article in Methods in enzymology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Expression and Functional Analysis of the Compact ThermophilicInternational journal of molecular sciences · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Travis H HandInstitute of Molecular Biophysics, Florida State University, Tallahassee, FL, United States.
Anuska DasInstitute of Molecular Biophysics, Florida State University, Tallahassee, FL, United States.
Hong LiInstitute of Molecular Biophysics, Florida State University, Tallahassee, FL, United States; Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, United States. Electronic address: hong.li@fsu.edu.
Florida State University · US

Funding

Structures of RNA Processing and Silencing Enzymes in ProkaryotesR01GM099604 · NIGMS · FLORIDA STATE UNIVERSITY · PI STROUPE, M. ELIZABETH · 2012 to 2023
$3.3M
Mechanisms and Applications of RNA-mediated Enzymes in Translation and ImmunityR35GM152081 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI Hong Li · 2024 to 2026
$1.8M
NIGMS NIH HHS R01 GM099604NIGMS NIH HHS R35 GM152081
6 · The paper itself

Abstract

Though making up nearly half of the known CRISPR-Cas9 family of enzymes, the Type II-C CRISPR-Cas9 has been underexplored for their molecular mechanisms and potential in safe gene editing applications. In comparison with the more popular Type II-A CRISPR-Cas9, the Type II-C enzymes are generally smaller in size and utilize longer base pairing in identification of their DNA substrates. These characteristics suggest easier portability and potentially less off-targets for Type II-C in gene editing applications. We describe identification and biochemical characterization of a thermophilic Type II-C CRISPR-Cas from Acidothermus cellulolyticus (AceCas9). We describe several library-based methods that enabled us to identify the PAM sequence and elements critical to protospacer mismatch surveillance of AceCas9.

Indexed as

ActinobacteriaBacterial ProteinsCRISPR-Associated Protein 9Directed Molecular EvolutionGene LibraryModels, MolecularBacterial ProteinsCRISPR-Associated Protein 9Cas9Off-targetsPAMThermophilic Cas9Type II-C CRISPR–Cas

Identifiers

PMID30691646
PMCPMC6423443
OpenAlexW2906866670

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.