Evidence map›Paper›PMID 30691388›Full record

ArticleBMC microbiology2019

Mfd protects against oxidative stress in Bacillus subtilis independently of its canonical function in DNA repair.

Holly Anne Martin, Katelyn E Porter, Carmen Vallin, Tatiana Ermi, Natalie Contreras, Mario Pedraza-Reyes, Eduardo A Robleto

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Microbiology and molecular biology reviews : MMBR · 2024
    Review
  6. Article
  7. 8-oxoguanine riboswitches in bacteria detect and respond to oxidative DNA damage.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. TheGenes · 2020
    Article
  15. Identification of Genes Regulating Cell Death inFrontiers in microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Holly Anne MartinSchool of Life Sciences, University of Nevada, Las Vegas, 4505 Maryland Parkway, Las Vegas, Nevada, 89154, USA.
Katelyn E PorterSchool of Life Sciences, University of Nevada, Las Vegas, 4505 Maryland Parkway, Las Vegas, Nevada, 89154, USA.
Carmen VallinSchool of Life Sciences, University of Nevada, Las Vegas, 4505 Maryland Parkway, Las Vegas, Nevada, 89154, USA.
Tatiana ErmiSchool of Life Sciences, University of Nevada, Las Vegas, 4505 Maryland Parkway, Las Vegas, Nevada, 89154, USA.
Natalie ContrerasSchool of Life Sciences, University of Nevada, Las Vegas, 4505 Maryland Parkway, Las Vegas, Nevada, 89154, USA.
Mario Pedraza-ReyesDepartment of Biology, Division of Natural and Exact Sciences, University of Guanajuato, P.O. Box 187, Gto. 36050, Guanajuato, Mexico.
Eduardo A RobletoSchool of Life Sciences, University of Nevada, Las Vegas, 4505 Maryland Parkway, Las Vegas, Nevada, 89154, USA. eduardo.robleto@unlv.edu.ORCID 0000-0002-3957-7101
University of Nevada, Las Vegas · USUniversidad de Guanajuato · MX

Funding

Outreach/Diversity/Pipeline ProjectP20GM103440 · NIGMS · UNIVERSITY OF NEVADA RENO · PI Julia Petereit · 2012 to 2026
$58.0M
UNDERGRADUATE RESEARCH AND TRAININGP20RR016464 · NCRR · UNIVERSITY OF NEVADA RENO · PI SCHLAUCH, KAREN · 2001 to 2011
$30.3M
Mfd promotes mutagenesis and prevents protein damage in cells experiencing oxidative stress in Bacillus subtilisR15GM131410 · NIGMS · UNIVERSITY OF NEVADA LAS VEGAS · PI ROBLETO, EDUARDO A · 2018 to 2018
$429k
Stationary phase mutagenesis, a component of cell differentiationR15GM110624 · NIGMS · UNIVERSITY OF NEVADA LAS VEGAS · PI ROBLETO, EDUARDO A · 2014 to 2014
$339k
NCRR NIH HHS P20 RR016464NIGMS NIH HHS P20 GM103440NIGMS NIH HHS R15 GM110624NIGMS NIH HHS R15 GM131410
6 · The paper itself

Abstract

backgroundPrevious reports showed that mutagenesis in nutrient-limiting conditions is dependent on Mfd in Bacillus subtilis. Mfd initiates one type of transcription-coupled repair (TCR); this type of repair is known to target bulky lesions, like those associated with UV exposure. Interestingly, the roles of Mfd in repair of oxidative-promoted DNA damage and regulation of transcription differ. Here, we used a genetic approach to test whether Mfd protected B. subtilis from exposure to two different oxidants.

resultsWild-type cells survived tert-butyl hydroperoxide (t-BHP) exposure significantly better than Mfd-deficient cells. This protective effect was independent of UvrA, a component of the canonical TCR/nucleotide excision repair (NER) pathway. Further, our results suggest that Mfd and MutY, a DNA glycosylase that processes 8-oxoG DNA mismatches, work together to protect cells from lesions generated by oxidative damage. We also tested the role of Mfd in mutagenesis in starved cells exposed to t-BHP. In conditions of oxidative stress, Mfd and MutY may work together in the formation of mutations. Unexpectedly, Mfd increased survival when cells were exposed to the protein oxidant diamide. Under this type of oxidative stress, cells survival was not affected by MutY or UvrA.

conclusionsThese results are significant because they show that Mfd mediates error-prone repair of DNA and protects cells against oxidation of proteins by affecting gene expression; Mfd deficiency resulted in increased gene expression of the OhrR repressor which controls the cellular response to organic peroxide exposure. These observations point to Mfd functioning beyond a DNA repair factor in cells experiencing oxidative stress.

Indexed as

DNA RepairOxidative StressBacillus subtilisBacterial ProteinsDiamideDNA GlycosylasesMutationOxidantstert-ButylhydroperoxideTranscription FactorsTranscription, GeneticBacterial ProteinsDiamideDNA GlycosylasesOxidantstert-ButylhydroperoxideTranscription Factorstranscription repair coupling factor protein, BacteriaMfdMutagenesisMutYOxidative damage

Identifiers

PMID30691388
PMCPMC6350366
OpenAlexW2932626984

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.