Evidence map›Paper›PMID 30691184›Full record

ArticleMolecules (Basel, Switzerland)2019

Transcriptome Analysis Clarified Genes Involved in Betalain Biosynthesis in the Fruit of Red Pitayas (

Xingyuan Xi, Yuan Zong, Shiming Li, Dong Cao, Xuemei Sun, Baolong Liu

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  11. Transcriptome Analysis ofFrontiers in plant science · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Xingyuan XiQinghai Province Key Laboratory of Crop Molecular Breeding, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining 810008, China. xixy@nwipb.cas.cn.
Yuan ZongQinghai Province Key Laboratory of Crop Molecular Breeding, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining 810008, China. laughing1898@icloud.com.
Shiming LiQinghai Province Key Laboratory of Crop Molecular Breeding, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining 810008, China. lishiming@genomics.cn.
Dong CaoQinghai Province Key Laboratory of Crop Molecular Breeding, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining 810008, China. caodong@nwipb.cas.cn.
Xuemei SunQinghai Key Laboratory of Genetics and Physiology of Vegetables, Qinghai University, Xining 810008, China. Sunxuemei1008@163.com.
Baolong LiuQinghai Province Key Laboratory of Crop Molecular Breeding, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining 810008, China. blliu@nwipb.cas.cn.
University of Chinese Academy of Sciences · CNXinjiang Institute of Ecology and Geography · CNChinese Academy of Sciences · CNQinghai University · CN

Funding

QingHai Department of Science and Technology 2018-NK-133, 2018-ZJ-T08, 2019-ZJ-982QWest Light Talent Program of the Chinese Academy of Sciences, the Open Project of State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University 2018-KF-06
6 · The paper itself

Abstract

The red flesh trait gives red pitayas more healthful components and a higher price, while the genetic mechanism behind this trait is unknown. In this manuscript, transcriptome analysis was employed to discover the genetic differences between white and red flesh in pitayas. A total of 27.99 Gb clean data were obtained for four samples. Unigenes, 79,049 in number, were generated with an average length of 1333 bp, and 52,618 Unigenes were annotated. Compared with white flesh, the expression of 10,215 Unigenes was up-regulated, and 4853 Unigenes were down-regulated in red flesh. The metabolic pathways accounted for 64.6% of all differentially expressed Unigenes in KEGG pathways. The group with high betalain content in red flesh and all structural genes, related to betalain biosynthesis, had a higher expression in red flesh than white flesh. The expression of the key gene, tyrosine hydroxylase

Indexed as

Gene Expression Regulation, PlantTranscriptomeAnthocyaninsBetalainsBiosynthetic PathwaysCactaceaeComputational BiologyFruitGene Expression ProfilingGenes, PlantHigh-Throughput Nucleotide SequencingPhylogenyAnthocyaninsBetalainsbetalain biosynthesispitayasred fleshtranscriptome analysis

Identifiers

PMID30691184
PMCPMC6384678
OpenAlexW2912745262

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.