Evidence map›Paper›PMID 30689861›Full record

ArticleHuman molecular genetics2019

The TFAP2A-IRF6-GRHL3 genetic pathway is conserved in neurulation.

Youssef A Kousa, Huiping Zhu, Walid D Fakhouri, Yunping Lei, Akira Kinoshita, Raeuf R Roushangar, Nicole K Patel, A J Agopian, Wei Yang, Elizabeth J Leslie and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Meta-Analysis ofGenes · 2019
    Pooled it
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  8. ARHGAP29 promotes keratinocyte proliferation and migration in vitro and is dispensable for in vivo wound healing.Developmental dynamics : an official publication of the American Association of Anatomists · 2025
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  11. Neural crest and periderm-specific requirements ofbioRxiv : the preprint server for biology · 2024
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  15. Review
  16. The Polycomb group geneFrontiers in neuroscience · 2022
    Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 13 institutions in 4 countries.

Youssef A KousaDepartments of Biochemistry and Molecular Biology.
Huiping ZhuDell Pediatric Research Institute, Department of Nutritional Sciences, University of Texas at Austin, Austin, TX, USA.
Walid D FakhouriDepartment of Diagnostic & Biomedical Sciences, School of Dentistry, University of Texas Health Science Center at Houston, Houston, TX, USA.
Yunping LeiDell Pediatric Research Institute, Department of Nutritional Sciences, University of Texas at Austin, Austin, TX, USA.
Akira KinoshitaDepartment of Human Genetics, Nagasaki University, Nagasaki, Japan.
Raeuf R RoushangarDepartments of Biochemistry and Molecular Biology.
Nicole K PatelMicrobiology and Molecular Genetics.
A J AgopianHuman Genetics Center, Division of Epidemiology, Human Genetics and Environmental Sciences, University of Texas School of Public Health, Houston, TX, USA.
Wei YangDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA, USA.
Elizabeth J LeslieDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA.
Tamara D BuschDepartments of Pediatrics.
Tamer A MansourGenetics PhD Program.
Xiao LiAnatomy and Cell Biology, University of Iowa, Iowa City, IA, USA.
Arianna L SmithGenetics PhD Program.
Edward B LiCenter for Regenerative Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Dhruv B SharmaCenter for Statistical Training & Consulting, Michigan State University, East Lansing, MI, USA.
Trevor J WilliamsDepartment of Craniofacial Biology, University of Colorado Denver at Anschutz Medical Campus, Aurora, CO, USA.
Yang ChaiCenter for Craniofacial Molecular Biology, Ostrow School of Dentistry, University of Southern California, Los Angeles, CA, USA.
Brad A AmendtAnatomy and Cell Biology, University of Iowa, Iowa City, IA, USA.
Eric C LiaoCenter for Regenerative Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Laura E MitchellHuman Genetics Center, Division of Epidemiology, Human Genetics and Environmental Sciences, University of Texas School of Public Health, Houston, TX, USA.
Alexander G BassukDepartments of Pediatrics.
Simon GregoryDuke Molecular Physiology Institute, Duke University Medical Center, Durham, NC, USA.
Allison Ashley-KochDuke Molecular Physiology Institute, Duke University Medical Center, Durham, NC, USA.
Gary M ShawDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA, USA.
Richard H FinnellDell Pediatric Research Institute, Department of Nutritional Sciences, University of Texas at Austin, Austin, TX, USA.
Brian C SchutteDepartments of Biochemistry and Molecular Biology.
The University of Texas Health Science Center at Houston · USDuke Medical Center · USHarvard University · USStanford University · USUniversity of Iowa · USChildren's National · USEmory University · USHealth and Human Development (2HD) Research Network · CMMansoura University · EGMichigan State University · USNagasaki University · JPUniversity of Colorado Anschutz Medical Campus · USUniversity of Southern California · US

Funding

Risk Genes and Environment Interactions in NTDsP01HD067244 · NICHD · WEILL MEDICAL COLL OF CORNELL UNIV · PI GROSS, STEVEN S · 2011 to 2020
$12.6M
THE ROLE OF AP-2 IN CRANIOFACIAL DEVELOPMENTR01DE012728 · NIDCR · YALE UNIVERSITY · PI WILLIAMS, TREVOR J · 1998 to 2013
$5.5M
Impact of Genetic Variation on Folate Metabolsim: Etiology of Neural Tube DefectsR01GM072859 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 2007 to 2015
$4.4M
Transfer 5R01DE027983 - Genomic and Functional Analysis of IRF6 Target Genes in Orofacial Cleft PathogenesisR01DE027983 · NIDCR · MASSACHUSETTS GENERAL HOSPITAL · PI LIAO, ERIC CHIEN-WEI · 2019 to 2023
$3.3M
CLONING AND CHARACTERIZATION OF THE VAN DER WOUDE GENER01DE013513 · NIDCR · UNIVERSITY OF IOWA · PI SCHUTTE, BRIAN C · 2000 to 2009
$2.6M
Role of Ectodermal Signals in Facial Prominence Outgrowth and DevelopmentR01DE019843 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI WILLIAMS, TREVOR J · 2009 to 2013
$1.7M
Genetics of Craniofacial Disorders and Related PhenotypesR00DE025060 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LESLIE-CLARKSON, ELIZABETH JANE · 2017 to 2019
$732k
Modeling of pathological significance of non-coding DNA variants in cis-overlapping motifs of p53 and cMycR15GM122030 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI FAKHOURI, WALID D. · 2016 to 2016
$476k
Genetics of Craniofacial Disorders and Related PhenotypesK99DE025060 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LESLIE-CLARKSON, ELIZABETH JANE · 2015 to 2016
$188k
Role of Irf6 in palatal epitheliumF31DE022696 · NIDCR · MICHIGAN STATE UNIVERSITY · PI KOUSA, YOUSSEF A · 2012 to 2013
$60k
NCBDD CDC HHS U01 DD001033NCBDD CDC HHS U01 DD001226NICHD NIH HHS P01 HD067244NIDCR NIH HHS F31 DE022696NIDCR NIH HHS K99 DE025060NIDCR NIH HHS R00 DE025060NIDCR NIH HHS R01 DE012728NIDCR NIH HHS R01 DE013513NIDCR NIH HHS R01 DE019843NIDCR NIH HHS R01 DE027983NIGMS NIH HHS R01 GM072859NIGMS NIH HHS R15 GM122030
6 · The paper itself

Abstract

Mutations in IRF6, TFAP2A and GRHL3 cause orofacial clefting syndromes in humans. However, Tfap2a and Grhl3 are also required for neurulation in mice. Here, we found that homeostasis of Irf6 is also required for development of the neural tube and associated structures. Over-expression of Irf6 caused exencephaly, a rostral neural tube defect, through suppression of Tfap2a and Grhl3 expression. Conversely, loss of Irf6 function caused a curly tail and coincided with a reduction of Tfap2a and Grhl3 expression in tail tissues. To test whether Irf6 function in neurulation was conserved, we sequenced samples obtained from human cases of spina bifida and anencephaly. We found two likely disease-causing variants in two samples from patients with spina bifida. Overall, these data suggest that the Tfap2a-Irf6-Grhl3 genetic pathway is shared by two embryologically distinct morphogenetic events that previously were considered independent during mammalian development. In addition, these data suggest new candidates to delineate the genetic architecture of neural tube defects and new therapeutic targets to prevent this common birth defect.

Indexed as

AnimalsConserved SequenceDNA-Binding ProteinsGene Expression Regulation, DevelopmentalHumansInterferon Regulatory FactorsMiceMutationNeural TubeNeural Tube DefectsNeurulationSignal TransductionSpinal DysraphismTranscription Factor AP-2Transcription FactorsDNA-Binding ProteinsGrhl3 protein, mouseInterferon Regulatory FactorsIRF6 protein, mouseTfap2a protein, mouseTranscription Factor AP-2Transcription Factors

Identifiers

PMID30689861
PMCPMC6494790
OpenAlexW2913261919

What OpenQuestion holds

Textmetadata
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.