Evidence map›Paper›PMID 30689386›Full record

ArticleJournal of the American Chemical Society2019

The Alkyne Moiety as a Latent Electrophile in Irreversible Covalent Small Molecule Inhibitors of Cathepsin K.

Elma Mons, Ineke D C Jansen, Jure Loboda, Bjorn R van Doodewaerd, Jill Hermans, Martijn Verdoes, Constant A A van Boeckel, Peter A van Veelen, Boris Turk, Dusan Turk and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 112 citations in OpenAlex.

  1. Increased Bone Resorption during Lactation in Pycnodysostosis.International journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Elma MonsDepartment of Cell and Chemical Biology, Oncode Institute , Leiden University Medical Center , 2300 RC Leiden , The Netherlands.ORCID 0000-0003-1105-6424
Ineke D C JansenDepartment of Periodontology , Academic Center For Dentistry Amsterdam (ACTA) , 1081 LA Amsterdam , The Netherlands.
Jure LobodaDepartment of Biochemistry and Molecular and Structural Biology , Jožef Stefan Institute , Ljubljana 1000 , Slovenia.
Bjorn R van DoodewaerdDepartment of Cell and Chemical Biology, Oncode Institute , Leiden University Medical Center , 2300 RC Leiden , The Netherlands.
Jill HermansDepartment of Cell and Chemical Biology, Oncode Institute , Leiden University Medical Center , 2300 RC Leiden , The Netherlands.
Martijn VerdoesDepartment of Tumor Immunology , Institute for Molecular Life Sciences Radboud UMC , 6525 GA Nijmegen , The Netherlands.ORCID 0000-0001-8753-3528
Constant A A van BoeckelLeiden Institute of Chemistry , Leiden University , 2311 EZ Leiden , The Netherlands.
Peter A van VeelenCentre for Proteomics and Metabolomics , Leiden University Medical Center , 2333 ZA Leiden , The Netherlands.
Boris TurkDepartment of Biochemistry and Molecular and Structural Biology , Jožef Stefan Institute , Ljubljana 1000 , Slovenia.
Dusan TurkDepartment of Biochemistry and Molecular and Structural Biology , Jožef Stefan Institute , Ljubljana 1000 , Slovenia.
Huib OvaaDepartment of Cell and Chemical Biology, Oncode Institute , Leiden University Medical Center , 2300 RC Leiden , The Netherlands.ORCID 0000-0002-0068-054X
Leiden University Medical Center · NLJožef Stefan Institute · SIAcademic Center for Dentistry Amsterdam · NLLeiden University · NLRadboud University Nijmegen · NLUniversity of Ljubljana · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Irreversible covalent inhibitors can have a beneficial pharmacokinetic/pharmacodynamics profile but are still often avoided due to the risk of indiscriminate covalent reactivity and the resulting adverse effects. To overcome this potential liability, we introduced an alkyne moiety as a latent electrophile into small molecule inhibitors of cathepsin K (CatK). Alkyne-based inhibitors do not show indiscriminate thiol reactivity but potently inhibit CatK protease activity by formation of an irreversible covalent bond with the catalytic cysteine residue, confirmed by crystal structure analysis. The rate of covalent bond formation ( k

Indexed as

AlkynesCathepsin KCysteine Proteinase InhibitorsHumansModels, MolecularMolecular StructureSmall Molecule LibrariesAlkynesCathepsin KCysteine Proteinase InhibitorsSmall Molecule Libraries

Identifiers

PMID30689386
PMCPMC6396318
OpenAlexW2914871918

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.