Evidence map›Paper›PMID 30689055›Full record

ArticleExtremophiles : life under extreme conditions2019

Stability of cytochromes c' from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure.

Asako Suka, Hiroya Oki, Yuki Kato, Kazuki Kawahara, Tadayasu Ohkubo, Takahiro Maruno, Yuji Kobayashi, Sotaro Fujii, Satoshi Wakai, Lisa Lisdiana and 1 more

Abstract read
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In one paragraph

Article in Extremophiles : life under extreme conditions, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Crystal structure of thermally stable homodimeric cytochrome c'-β from Thermus thermophilus.Acta crystallographica. Section F, Structural biology communications · 2022
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Asako SukaGraduate School of Biosphere Science, Hiroshima University, Higashi-Hiroshima, 1-4-4 Kagamiyama, Hiroshima, 739-8528, Japan.
Hiroya OkiGraduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Suita, Osaka, 565-0871, Japan.
Yuki KatoGraduate School of Biosphere Science, Hiroshima University, Higashi-Hiroshima, 1-4-4 Kagamiyama, Hiroshima, 739-8528, Japan.
Kazuki KawaharaGraduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Suita, Osaka, 565-0871, Japan.
Tadayasu OhkuboGraduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Suita, Osaka, 565-0871, Japan.
Takahiro MarunoGraduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.
Yuji KobayashiGraduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.
Sotaro FujiiGraduate School of Biosphere Science, Hiroshima University, Higashi-Hiroshima, 1-4-4 Kagamiyama, Hiroshima, 739-8528, Japan.
Satoshi WakaiGraduate School of Science, Technology, and Innovation, Kobe University, 1-1 Rokkodai-cho, Nada-ku, Kobe, 657-8501, Japan.
Lisa LisdianaGraduate School of Biosphere Science, Hiroshima University, Higashi-Hiroshima, 1-4-4 Kagamiyama, Hiroshima, 739-8528, Japan.
Yoshihiro SambongiGraduate School of Biosphere Science, Hiroshima University, Higashi-Hiroshima, 1-4-4 Kagamiyama, Hiroshima, 739-8528, Japan. sambongi@hiroshima-u.ac.jp.
Osaka University · JPHiroshima University · JPKobe University · JPUniversitas Negeri Surabaya · ID

Funding

Grant from the Japan Society for the Promotion of Science 25-1446Grant-in-Aid for Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology 16K07692Grant-in-Aid for Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology 26240045Grant-in-Aid for Young Human Resource Support from the Ministry of Education, Culture, Sports, Science, and Technology in Japan 1617PD0536
6 · The paper itself

Abstract

The stability of dimeric cytochrome c' from a thermophile, as compared with that of a homologous mesophilic counterpart, is attributed to strengthened interactions around the heme and at the subunit-subunit interface, both of which are molecular interior regions. Here, we showed that interactions in the equivalent interior regions of homologous cytochromes c' from two psychrophiles, Shewanella benthica and Shewanella violacea (SBCP and SVCP, respectively) were similarly weakened as compared with those of the counterparts of psychrophilic Shewanella livingstonensis and mesophilic Shewanella amazonensis (SLCP and SACP, respectively), and consistently the stability of SVCP, SLCP, and SACP increased in that order. Therefore, the stability of cytochromes c' from the psychrophile, mesophile, and thermophile is systematically regulated in their molecular interior regions. Unexpectedly, however, the stability of SBCP was significantly higher than that of SVCP, and the former had additional molecular surface interactions. Collectively, SBCP had weakened interior interactions like SVCP did, but the former was stabilized at the molecular surface as compared with the latter, implying complex multiple adaptation of the proteins because the psychrophilic sources of SBCP and SVCP are also piezophilic, thriving in deep-sea extreme environments of low temperature and high hydrostatic pressure.

Indexed as

Adaptation, PhysiologicalBacterial ProteinsCold TemperatureCytochrome c GroupEnzyme StabilityHydrostatic PressureShewanellaBacterial ProteinsCytochrome c GroupCytochrome c′PiezophileProtein stabilityPsychrophileShewanella

Identifiers

PMID30689055
OpenAlexW2913172667

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.