Evidence map›Paper›PMID 30688211›Full record

ArticleeLife2019

Hexameric helicase G40P unwinds DNA in single base pair steps.

Michael Schlierf, Ganggang Wang, Xiaojiang S Chen, Taekjip Ha

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Computationally exploring the mechanism of bacteriophage T7 gp4 helicase translocating along ssDNA.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Review
  10. Article
  11. Mechanisms of hexameric helicases.Critical reviews in biochemistry and molecular biology · 2021
    Review
  12. Review
  13. Review
  14. Branched unwinding mechanism of the Pif1 family of DNA helicases.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Asymmetric base-pair opening drives helicase unwinding dynamics.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Michael SchlierfPhysics Department and Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Illinois, United States.ORCID 0000-0002-6209-2364
Ganggang WangMolecular and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, United States.
Xiaojiang S ChenMolecular and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, United States.ORCID 0000-0001-9574-0551
Taekjip HaPhysics Department and Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Illinois, United States.ORCID 0000-0003-2195-6258
University of Southern California · USHoward Hughes Medical Institute · USUniversity of Illinois Urbana-Champaign · US

Funding

SV40 T Antigen Structure and Helicase MechanismsR01AI055926 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEN, XIAOJIANG S · 2004 to 2013
$4.0M
Single Molecule Studies of Nucleic Acids RemodelingR35GM122569 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Taekjip Ha · 2017 to 2026
$3.5M
Acquisition of GE Typhoon FLA9500 Variable Mode ImagerS10OD021567 · OD · JOHNS HOPKINS UNIVERSITY · PI MCCAFFERY, J. MICHAEL · 2017 to 2017
$147k
Bundesministerium für Bildung und Forschung 03Z2EN11Deutsche Forschungsgemeinschaft SCHL1896/1-1National Science Foundation PHY-082261National Science Foundation PHY-1430124NIAID NIH HHS R01 AI055926NIGMS NIH HHS R35 GM122569NIH HHS 137405NIH HHS AI055926NIH HHS GM065367NIH HHS GM122569NIH HHS S10 OD021567
6 · The paper itself

Abstract

Most replicative helicases are hexameric, ring-shaped motor proteins that translocate on and unwind DNA. Despite extensive biochemical and structural investigations, how their translocation activity is utilized chemo-mechanically in DNA unwinding is poorly understood. We examined DNA unwinding by G40P, a DnaB-family helicase, using a single-molecule fluorescence assay with a single base pair resolution. The high-resolution assay revealed that G40P by itself is a very weak helicase that stalls at barriers as small as a single GC base pair and unwinds DNA with the step size of a single base pair. Binding of a single ATPγS could stall unwinding, demonstrating highly coordinated ATP hydrolysis between six identical subunits. We observed frequent slippage of the helicase, which is fully suppressed by the primase DnaG. We anticipate that these findings allow a better understanding on the fine balance of thermal fluctuation activation and energy derived from hydrolysis.

Indexed as

Base PairingProtein MultimerizationAdenosine TriphosphateBase CompositionDNADNA HelicasesDNA PrimaseHydrolysisProtein SubunitsViral Proteinsadenosine 5'-O-(3-thiotriphosphate)Adenosine TriphosphateDNADNA HelicasesDNA PrimaseG40P helicase protein, Bacteriophage SPP1Protein SubunitsViral ProteinsDnaBDnaGG40Pmolecular biophysicsnonesingle-molecule FRETstructural biology

Identifiers

PMID30688211
PMCPMC6370340
OpenAlexW2894125899

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.