ArticleFrontiers in plant science2018
Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes.
Article in Frontiers in plant science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
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38 citing papers in PubMed, 114 citations in OpenAlex.
- Macroevolutionary dynamics and predictors of tropical rain forest plant diversity.Science advances · 2026Article
- Urticaceae542 as a novel probe set combining universal and lineage-specific loci for phylogenomics of Urticaceae.Scientific reports · 2025Article
- Late-acting self-incompatibility in Asimina triloba: implications for the evolution of self-incompatibility in angiosperms.BMC plant biology · 2025Article
- Do syngameons exist in tropical trees? Challenges to determine their existence and estimate their frequency.Biology letters · 2025Review
- Development of the embryo and ruminate endosperm in an early-divergent angiosperm, Asimina triloba (Annonaceae).Annals of botany · 2025Article
- There and back again: historical biogeography of neotropical magnolias based on high-throughput sequencing.BMC ecology and evolution · 2025Article
- Toward a phylogenomic classification of magnoliids.American journal of botany · 2025Article
- Dispersal from Africa to the Neotropics was followed by multiple transitions across Neotropical biomes facilitated by frugivores.Annals of botany · 2024Article
- Sequential diversification with Miocene extinction and Pliocene speciation linked to mountain uplift explains the diversity of the African rain forest clade Monodoreae (Annonaceae).Annals of botany · 2024Article
- New insights into polyploid evolution and dynamic nature of Ludwigia section Isnardia (Onagraceae).Botanical studies · 2023Article
- Phylogenomic inference of the African tribe Monodoreae (Annonaceae) and taxonomic revision ofPhytoKeys · 2023Article
- PhytoKeys · 2023Article
- A New Approach Using Targeted Sequence Capture for Phylogenomic Studies across Cactaceae.Genes · 2022Article
- A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life.Systematic biology · 2022Article
- Flora of Cameroon - Annonaceae Vol 45.PhytoKeys · 2022Article
- Oxygenated Cyclohexene Derivatives from the Stem and Root Barks ofJournal of natural products · 2021Article
- Admixture may be extensive among hyperdominant Amazon rainforest tree species.The New phytologist · 2021Article
- New targets acquired: Improving locus recovery from the Angiosperms353 probe set.Applications in plant sciences · 2021Article
- The best of both worlds: Combining lineage-specific and universal bait sets in target-enrichment hybridization reactions.Applications in plant sciences · 2021Article
- Chromosome-level reference genome of the soursop (Annona muricata): A new resource for Magnoliid research and tropical pomology.Molecular ecology resources · 2021Article
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Authors and funding
8 authors at 6 institutions in 4 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Targeted enrichment and sequencing of hundreds of nuclear loci for phylogenetic reconstruction is becoming an important tool for plant systematics and evolution. Annonaceae is a major pantropical plant family with 110 genera and ca. 2,450 species, occurring across all major and minor tropical forests of the world. Baits were designed by sequencing the transcriptomes of five species from two of the largest Annonaceae subfamilies. Orthologous loci were identified. The resulting baiting kit was used to reconstruct phylogenetic relationships at two different levels using concatenated and gene tree approaches: a family wide Annonaceae analysis sampling 65 genera and a species level analysis of tribe Piptostigmateae sampling 29 species with multiple individuals per species. DNA extraction was undertaken mainly on silicagel dried leaves, with two samples from herbarium dried leaves. Our kit targets 469 exons (364,653 bp of sequence data), successfully capturing sequences from across Annonaceae. Silicagel dried and herbarium DNA worked equally well. We present for the first time a nuclear gene-based phylogenetic tree at the generic level based on 317 supercontigs. Results mainly confirm previous chloroplast based studies. However, several new relationships are found and discussed. We show significant differences in branch lengths between the two large subfamilies Annonoideae and Malmeoideae. A new tribe, Annickieae, is erected containing a single African genus
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