Evidence map›Paper›PMID 30685436›Full record

ArticleCell systems2019

A Computational Framework for Genome-wide Characterization of the Human Disease Landscape.

Young-Suk Lee, Arjun Krishnan, Rose Oughtred, Jennifer Rust, Christie S Chang, Joseph Ryu, Vessela N Kristensen, Kara Dolinski, Chandra L Theesfeld, Olga G Troyanskaya

Abstract read
In one paragraph

Article in Cell systems, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. AΙ-Driven Drug Repurposing: Applications and Challenges.Medicines (Basel, Switzerland) · 2025
    Review
  4. Patient stratification reveals the molecular basis of disease co-occurrences.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Young-Suk LeeLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA; Department of Computer Science, Princeton University, Princeton, NJ, USA; School of Biological Sciences, Seoul National University, Seoul, South Korea.
Arjun KrishnanLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA; Departments of Computational Mathematics, Science, and Engineering and Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, USA.
Rose OughtredLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Jennifer RustLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Christie S ChangLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Joseph RyuLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Vessela N KristensenDepartment of Genetics, Institute of Cancer Research, Oslo University Hospital, Radiumhospitalet, Oslo, Norway; Institute of Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo, Norway; Department of Clinical Molecular Biology (EpiGen), Division of Medicine, Akershus University Hospital, Lørenskog, Norway.
Kara DolinskiLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Chandra L TheesfeldLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA. Electronic address: chandrat@princeton.edu.
Olga G TroyanskayaLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA; Department of Computer Science, Princeton University, Princeton, NJ, USA; Flatiron Institute, Simons Foundation, New York, NY, USA. Electronic address: ogt@cs.princeton.edu.

Funding

BioGRID: An open resource for biological interactions and network analysisR01OD010929 · OD · SINAI HEALTH SYSTEM · PI KARA DOLINSKI, Mike Tyers · 2012 to 2026
$13.9M
lntegration and Visualization of Diverse Biological DataR01GM071966 · NIGMS · PRINCETON UNIVERSITY · PI TROYANSKAYA, OLGA G · 2005 to 2022
$6.4M
Systematic data curation and integration to link models of human diseaseR24OD011194 · OD · PRINCETON UNIVERSITY · PI DOLINSKI, KARA · 2012 to 2014
$1.9M
CIHRNIGMS NIH HHS R01 GM071966NIH HHS R01 OD010929NIH HHS R24 OD011194
6 · The paper itself

Abstract

A key challenge for the diagnosis and treatment of complex human diseases is identifying their molecular basis. Here, we developed a unified computational framework, URSA

Indexed as

Gene Expression ProfilingGenomicsHumansMachine LearningTranscriptomedrug repurposingfunctional genomicsgene expression profilinghuman diseasesmachine learningpublic big data

Identifiers

PMID30685436
PMCPMC7374759

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.