Evidence map›Paper›PMID 30684023›Full record

ArticlePlant cell reports2019

Single and multiple gene knockouts by CRISPR-Cas9 in maize.

Nicolas M Doll, Laurine M Gilles, Marie-France Gérentes, Christelle Richard, Jeremy Just, Yannick Fierlej, Virginia M G Borrelli, Ghislaine Gendrot, Gwyneth C Ingram, Peter M Rogowsky and 1 more

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In one paragraph

Article in Plant cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 68 citations in OpenAlex.

  1. Pooled it
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  13. Function Analysis of theInternational journal of molecular sciences · 2022
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  18. The Functional Association ofInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 3 countries.

Nicolas M DollLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, 69342, Lyon, France.
Laurine M GillesLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, 69342, Lyon, France.
Marie-France GérentesLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, 69342, Lyon, France.
Christelle RichardLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, 69342, Lyon, France.
Jeremy JustLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, 69342, Lyon, France.ORCID http://orcid.org/0000-0003-0842-9808
Yannick FierlejLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, 69342, Lyon, France.
Virginia M G BorrelliDepartment of Sustainable Crop Production, Università Cattolica del Sacro Cuore, Piacenza, Italy.
Ghislaine GendrotLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, 69342, Lyon, France.
Gwyneth C IngramLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, 69342, Lyon, France.ORCID http://orcid.org/0000-0002-1425-9545
Peter M RogowskyLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, 69342, Lyon, France.ORCID http://orcid.org/0000-0003-4822-3783
Thomas WidiezLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, 69342, Lyon, France. thomas.widiez@ens-lyon.fr.ORCID http://orcid.org/0000-0001-6002-2306
Université Claude Bernard Lyon 1 · FRUniversità Cattolica del Sacro Cuore · IT

Funding

Agence Nationale de la Recherche ANR-11-BTBR-0001_GENIUSAssociation Nationale de la Recherche et de la Technologie 2015/0777Association Nationale de la Recherche et de la Technologie 2018/0480Emergence de Jeune Equipe INRA SeedCom
6 · The paper itself

Abstract

key messageThe analysis of 93 mutant alleles in 18 genes demonstrated that CRISPR-Cas9 is a robust tool for targeted mutagenesis in maize, permitting efficient generation of single and multiple knockouts. CRISPR-Cas9 technology is a simple and efficient tool for targeted mutagenesis of the genome. It has been implemented in many plant species, including crops such as maize. Here we report single- and multiple-gene mutagenesis via stably transformed maize plants. Two different CRISPR-Cas9 vectors were used allowing the expression of multiple guide RNAs and different strategies to knockout either independent or paralogous genes. A total of 12 plasmids, representing 28 different single guide RNAs (sgRNAs), were generated to target 20 genes. For 18 of these genes, at least one mutant allele was obtained, while two genes were recalcitrant to sequence editing. 19% (16/83) of mutant plants showed biallelic mutations. Small insertions or deletions of less than ten nucleotides were most frequently observed, regardless of whether the gene was targeted by one or more sgRNAs. Deletions of defined regions located between the target sites of two guide RNAs were also reported although the exact deletion size was variable. Double and triple mutants were created in a single step, which is especially valuable for functional analysis of genes with strong genetic linkage. Off-target effects were theoretically limited due to rigorous sgRNA design and random experimental checks at three potential off-target sites did not reveal any editing. Sanger chromatograms allowed to unambiguously class the primary transformants; the majority (85%) were fully edited plants transmitting systematically all detected mutations to the next generation, generally following Mendelian segregation.

Indexed as

CRISPR-Cas SystemsGene EditingGene Knockout TechniquesGenome, PlantMutagenesisZea maysCRISPRGene editingMaizeMutagenesisSDN1Zea mays

Identifiers

PMID30684023
OpenAlexW2913378721

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.