Evidence map›Paper›PMID 30683754›Full record

ArticleGenome research2019

Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion.

Brittany L Daughtry, Jimi L Rosenkrantz, Nathan H Lazar, Suzanne S Fei, Nash Redmayne, Kristof A Torkenczy, Andrew Adey, Melissa Yan, Lina Gao, Byung Park and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 2 syntheses or guidelines pooled it, 130 citations in OpenAlex.

  1. An Updated Understanding of Human Embryonic Fragmentation.Reproductive sciences (Thousand Oaks, Calif.) · 2026
    Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Micronuclei: origins, assays, mechanisms, diseases and treatments.Signal transduction and targeted therapy · 2026
    Review
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  15. Building the brain mosaic: an expanded view.Trends in genetics : TIG · 2024
    Review
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  17. Article
  18. Article
  19. Article
  20. Review

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Brittany L DaughtryDepartment of Cell, Developmental and Cancer Biology, Oregon Health and Science University School of Medicine, Portland, Oregon 97239, USA.ORCID 0000-0002-3526-6250
Jimi L RosenkrantzDivision of Reproductive and Developmental Sciences, Oregon National Primate Research Center, Beaverton, Oregon 97006, USA.ORCID 0000-0003-4425-884X
Nathan H LazarDepartment of Medical Informatics and Clinical Epidemiology, Oregon Health and Science University School of Medicine, Portland, Oregon 97239, USA.ORCID 0000-0001-8798-824X
Suzanne S FeiBioinformatics and Biostatistics Core, Oregon National Primate Research Center, Beaverton, Oregon 97006, USA.
Nash RedmayneDivision of Reproductive and Developmental Sciences, Oregon National Primate Research Center, Beaverton, Oregon 97006, USA.
Kristof A TorkenczyDepartment of Molecular and Medical Genetics, Oregon Health and Science University School of Medicine, Portland, Oregon 97239, USA.
Andrew AdeyDepartment of Molecular and Medical Genetics, Oregon Health and Science University School of Medicine, Portland, Oregon 97239, USA.ORCID 0000-0001-7648-8717
Melissa YanBioinformatics and Biostatistics Core, Oregon National Primate Research Center, Beaverton, Oregon 97006, USA.
Lina GaoBioinformatics and Biostatistics Core, Oregon National Primate Research Center, Beaverton, Oregon 97006, USA.
Byung ParkBioinformatics and Biostatistics Core, Oregon National Primate Research Center, Beaverton, Oregon 97006, USA.
Kimberly A NevonenDepartment of Medicine, Knight Cardiovascular Institute, Oregon Health and Science University School of Medicine, Portland, Oregon 97239, USA.
Lucia CarboneDepartment of Molecular and Medical Genetics, Oregon Health and Science University School of Medicine, Portland, Oregon 97239, USA.ORCID 0000-0002-2118-107X
Shawn L ChavezDivision of Reproductive and Developmental Sciences, Oregon National Primate Research Center, Beaverton, Oregon 97006, USA.ORCID 0000-0002-8285-0222
Oregon National Primate Research Center · USOregon Health & Science University · US

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
TRAINING PROGRAM IN HEALTH INFORMATICST15LM007088 · NLM · OREGON HEALTH & SCIENCE UNIVERSITY · PI WILLIAM R HERSH, Vishnu Mohan · 1992 to 2026
$23.4M
PROJECT 4: ANDROGEN EXCESS IN ADIPOGENIC DYSFUNCTION IN PCOS WOMENP50HD071836 · NICHD · OREGON HEALTH & SCIENCE UNIVERSITY · PI SLAYDEN, OV D · 2014 to 2021
$14.7M
Defining the epigentic landscape at single cell resolutionR35GM124704 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI ADEY, ANDREW · 2017 to 2021
$2.3M
REPRODUCTIVE BIOLOGY--MULTIDISCIPLINARYT32HD007133 · NICHD · OREGON HEALTH & SCIENCE UNIVERSITY · PI ROSELLI, CHARLES E. · 1985 to 2014
$2.2M
Investigating Pre-Implantation Chromosomal Instability in Assisted ReproductionR01HD086073 · NICHD · OREGON HEALTH & SCIENCE UNIVERSITY · PI CHAVEZ, SHAWN L. · 2016 to 2020
$1.8M
Laser Scanning Confocal MicroscopeS10RR024585 · NCRR · OREGON HEALTH & SCIENCE UNIVERSITY · PI CORNEA, ANDA N. · 2008 to 2008
$443k
Investigation of ERV-K-env expression and function in placentationF31HD094472 · NICHD · OREGON HEALTH & SCIENCE UNIVERSITY · PI ROSENKRANTZ, JIMI · 2018 to 2020
$129k
NCRR NIH HHS S10 RR024585NICHD NIH HHS F31 HD094472NICHD NIH HHS P50 HD071836NICHD NIH HHS R01 HD086073NICHD NIH HHS T32 HD007133NIGMS NIH HHS R35 GM124704NIH HHS P51 OD011092NLM NIH HHS T15 LM007088
6 · The paper itself

Abstract

Aneuploidy that arises during meiosis and/or mitosis is a major contributor to early embryo loss. We previously showed that human preimplantation embryos encapsulate missegregated chromosomes into micronuclei while undergoing cellular fragmentation and that fragments can contain chromosomal material, but the source of this DNA was unknown. Here, we leveraged the use of a nonhuman primate model and single-cell DNA-sequencing (scDNA-seq) to examine the chromosomal content of 471 individual samples comprising 254 blastomeres, 42 polar bodies, and 175 cellular fragments from a large number (

Indexed as

AneuploidyAnimalsBlastocystBlastomeresChromosomesChromosome SegregationDNA Breaks, Double-StrandedFemaleMacacaMicronuclei, Chromosome-DefectiveSingle-Cell Analysis

Identifiers

PMID30683754
PMCPMC6396419
OpenAlexW2949283340

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.