Evidence map›Paper›PMID 30683693›Full record

ArticleThe Journal of biological chemistry2019

Influence of the N-terminal segment and the PHY-tongue element on light-regulation in bacteriophytochromes.

Geoffrey Gourinchas, Uršula Vide, Andreas Winkler

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  12. Characterisation of sequence-structure-function space in sensor-effector integrators of phytochrome-regulated diguanylate cyclases.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Geoffrey GourinchasFrom the Institute of Biochemistry, Graz University of Technology, 8010 Graz, Austria and.
Uršula VideFrom the Institute of Biochemistry, Graz University of Technology, 8010 Graz, Austria and.
Andreas WinklerFrom the Institute of Biochemistry, Graz University of Technology, 8010 Graz, Austria and andreas.winkler@TUGraz.at.ORCID 0000-0001-6221-9671

Funding

Austrian Science Fund FWF P 27124
6 · The paper itself

Abstract

Photoreceptors enable the integration of ambient light stimuli to trigger lifestyle adaptations via modulation of central metabolite levels involved in diverse regulatory processes. Red light-sensing bacteriophytochromes are attractive targets for the development of innovative optogenetic tools because of their natural modularity of coupling with diverse functionalities and the natural availability of the light-absorbing biliverdin chromophore in animal tissues. However, a rational design of such tools is complicated by the poor understanding of molecular mechanisms of light signal transduction over long distances-from the site of photon absorption to the active site of downstream enzymatic effectors. Here we show how swapping structural elements between two bacteriophytochrome homologs provides additional insight into light signal integration and effector regulation, involving a fine-tuned interplay of important structural elements of the sensor, as well as the sensor-effector linker. Facilitated by the availability of structural information of inhibited and activated full-length structures of one of the two homologs (

Indexed as

LightAllosteric RegulationAlteromonadaceaeBacterial ProteinsCyclic GMPKineticsLight Signal TransductionPhotoreceptors, MicrobialSpectrophotometry, UltravioletBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPPhotoreceptors, Microbialbilincyclic di-GMP (c-di-GMP)diguanylate cyclaseGGDEFphotobiologyphotoreceptorphytochromeprotein engineeringsignal transductionultraviolet-visible spectroscopy (UV-visible spectroscopy)

Identifiers

PMID30683693
PMCPMC6433076

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.