Evidence map›Paper›PMID 30683054›Full record

ArticleBMC gastroenterology2019

Helicobacter pylori vacA, cagA and iceA genotypes in dyspeptic patients from southwestern region, Saudi Arabia: distribution and association with clinical outcomes and histopathological changes.

Mohammed Akeel, Atef Shehata, Ahmed Elhafey, Erwa Elmakki, Thanaa Aboshouk, Hussein Ageely, Mohammed Mahfouz

Open access · goldAbstract read
In one paragraph

Article in BMC gastroenterology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 54 citations in OpenAlex.

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  9. The Effect ofPathogens (Basel, Switzerland) · 2025
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  10. Genomic epidemiology ofFrontiers in microbiology · 2025
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  11. Helicobacter pylori cagA, vacA, and iceA genotypes and clinical outcomes: a cross-sectional study in central Vietnam.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
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  14. Histology and histopathology · 2024
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  15. Eradication Rate and Factors InfluencingInternational journal of general medicine · 2024
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  17. Evaluation ofAnnals of medicine and surgery (2012) · 2023
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  18. Impact ofWorld journal of gastroenterology · 2023
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  19. Correlation analysis of gastric mucosal lesions withAnnals of translational medicine · 2022
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  20. Molecular characterization ofSaudi medical journal · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Mohammed AkeelDepartment of Anatomy, Faculty of Medicine, Jazan University, Jazan, Kingdom of Saudi Arabia. m.akeel@jazanu.edu.sa.ORCID http://orcid.org/0000-0002-2573-9309
Atef ShehataDepartment of Microbiology and Immunology, Faculty of Medicine, Jazan University, Jazan, Kingdom of Saudi Arabia.
Ahmed ElhafeyDepartment of Pathology, Faculty of Medicine, Jazan University, Jazan, Kingdom of Saudi Arabia.
Erwa ElmakkiDepartment of Internal Medicine, Faculty of Medicine, Jazan University, Jazan, Kingdom of Saudi Arabia.
Thanaa AboshoukDepartment of Biochemistry, Faculty of Medicine, Jazan University, Jazan, Kingdom of Saudi Arabia.
Hussein AgeelyDepartment of Internal Medicine, Faculty of Medicine, Jazan University, Jazan, Kingdom of Saudi Arabia.
Mohammed MahfouzDepartment of Family and Community Medicine, Faculty of Medicine, Jazan University, Jazan, Kingdom of Saudi Arabia.
Jazan University · SAAl-Azhar University · EGSuez Canal University · EG

Funding

King Abdulaziz City for Science and Technology (SA) ARP-47-32
6 · The paper itself

Abstract

backgroundThe aim of this study was to identify the common H. pylori virulence genes among dyspeptic Southwestern Saudi patients and their association with clinical outcomes and histopathological findings to help practitioners and researchers in the region for better management of infections caused by such bacteria.

methodsFour hundred two gastric biopsy specimens were analyzed using histopathological examination and real time-PCR. The positive 187 specimens by RT-PCR were genotyped using PCR targeting cagA, vacA and iceA genes.

resultsOne hundred twenty-eight gastric biopsy specimens were positive in genotyping PCRs. The cagA, vacA, iceA1 and iceA2 genes were detected in rates of 49.2% (63/128), 100%(128/128), 42.2% (54/128), 32.8% (42/128), respectively. The vacA s1as1bm2 subtype was the highest 23.4% (30/128), followed by m2 and s1a1b subtypes which were equally detected [16.4% (21/128) for each]. The iceA genes were significantly associated with gastritis and gastric ulcer. Overall, vacA genotypes were significantly associated with gastritis, gastric and duodenal ulcers. The vacA subtypes: s1as1bm2, s1a1b and s2 m2 showed chronic active gastritis in percentages of 90.0, 81, and 84.2%, respectively. All vacA mixed genotypes showed chronic active gastritis.

conclusionsH. pylori virulence genes are highly prevalent and diverse among patients with dyspepsia in Southwestern region of Saudi Arabia. The iceA genes and the different vacA subtypes are significantly associated with the clinical outcomes and histopathological changes especially chronic active gastritis.

Indexed as

AdolescentAdultAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinsBiopsyChronic DiseaseDuodenal UlcerDyspepsiaFemaleGastritisGenotypeHelicobacter InfectionsHelicobacter pyloriHumansMaleAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinscagA protein, Helicobacter pyloriice nucleation proteinVacA protein, Helicobacter pyloriGastric ulcerGastritisGenotypeH. pyloriPCRVirulence genes

Identifiers

PMID30683054
PMCPMC6346553
OpenAlexW2923879435

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.