Evidence map›Paper›PMID 30683046›Full record

ArticleBMC genomics2019

Sexual dimorphism in brain transcriptomes of Amami spiny rats (Tokudaia osimensis): a rodent species where males lack the Y chromosome.

Madison T Ortega, Nathan J Bivens, Takamichi Jogahara, Asato Kuroiwa, Scott A Givan, Cheryl S Rosenfeld

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Madison T OrtegaBond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA.
Nathan J BivensDNA Core Facility, University of Missouri, Columbia, MO, 65211, USA.
Takamichi JogaharaDivision of Bio-Resources, Frontier Science Research Center, University of Miyazaki, Miyazaki, 889-1692, Japan.
Asato KuroiwaDepartment of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan.
Scott A GivanBond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA.
Cheryl S RosenfeldBond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA. rosenfeldc@missouri.edu.ORCID http://orcid.org/0000-0002-4137-3933
University of Missouri · USUniversity of Missouri Health System · USHokkaido University · JPUniversity of Miyazaki · JP

Funding

MINORITY BIOMEDICAL RESEARCHERS TRAINING INITIATIVER25GM056901 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI HANNINK, MARK · 1999 to 2019
$8.4M
Endocrine Disrupting Chemicals, Epigenetic Alterations, and Autism-Like Behaviors in the Highly Social California Mouse ModelR01ES025547 · NIEHS · UNIVERSITY OF MISSOURI-COLUMBIA · PI ROBERTS, R. MICHAEL · 2016 to 2020
$1.9M
NIEHS NIH HHS R01 ES025547NIGMS NIH HHS R25 GM056901
6 · The paper itself

Abstract

backgroundBrain sexual differentiation is sculpted by precise coordination of steroid hormones during development. Programming of several brain regions in males depends upon aromatase conversion of testosterone to estrogen. However, it is not clear the direct contribution that Y chromosome associated genes, especially sex-determining region Y (Sry), might exert on brain sexual differentiation in therian mammals. Two species of spiny rats: Amami spiny rat (Tokudaia osimensis) and Tokunoshima spiny rat (T. tokunoshimensis) lack a Y chromosome/Sry, and these individuals possess an XO chromosome system in both sexes. Both Tokudaia species are highly endangered. To assess the neural transcriptome profile in male and female Amami spiny rats, RNA was isolated from brain samples of adult male and female spiny rats that had died accidentally and used for RNAseq analyses.

resultsRNAseq analyses confirmed that several genes and individual transcripts were differentially expressed between males and females. In males, seminal vesicle secretory protein 5 (Svs5) and cytochrome P450 1B1 (Cyp1b1) genes were significantly elevated compared to females, whereas serine (or cysteine) peptidase inhibitor, clade A, member 3 N (Serpina3n) was upregulated in females. Many individual transcripts elevated in males included those encoding for zinc finger proteins, e.g. zinc finger protein X-linked (Zfx).

conclusionsThis method successfully identified several genes and transcripts that showed expression differences in the brain of adult male and female Amami spiny rat. The functional significance of these findings, especially differential expression of transcripts encoding zinc finger proteins, in this unusual rodent species remains to be determined.

Indexed as

Sex CharacteristicsTranscriptomeAnimalsBrainFemaleGene Expression ProfilingMaleMurinaeReal-Time Polymerase Chain ReactionSequence Analysis, RNAY ChromosomeBioinformaticsEndangered animalsEstrogenOrganizational-Activational programmingRNAseqRodentSexual differentiationSRYSteroid hormonesTestosterone

Identifiers

PMID30683046
PMCPMC6347839
OpenAlexW2947239564

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.