ArticlePloS one2019
Simultaneous detection of macroevolutionary patterns in phenotypic means and rate of change with and within phylogenetic trees including extinct species.
Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed.
- Quantification of molar sub-regions suggests increasing herbivory during primate origins.Nature communications · 2026Article
- Evolutionary stasis in synapsid encephalization during the end-permian mass extinction.Scientific reports · 2026Article
- Leaf venation network evolution across clades and scales.Nature plants · 2025Article
- Strong evidence for the evolution of decreasing compositional heterogeneity in SARS-CoV-2 genomes during the pandemic.Scientific reports · 2025Article
- True seals achieved global distribution by breaking Bergmann's rule.Evolution; international journal of organic evolution · 2022Article
- Driven progressive evolution of genome sequence complexity in Cyanobacteria.Scientific reports · 2020Article
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Authors and funding
7 authors.
Funding
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Abstract
Recognizing evolutionary trends in phenotypic means and rates requires the application of phylogenetic comparative methods (PCMs). Most PCMs are unsuited to make full use of fossil information, which is a drawback, given the inclusion of such data improves, and in some cases even corrects, the proper understanding of trait evolution. Here we present a new computer application, written in R, that allows the simultaneous computation of temporal trends in phenotypic mean and evolutionary rate along a phylogeny, and to contrast such patterns among different clades within the tree. By using simulation experiments, we show the new implementation, names search.trend is as powerful as existing PCM tools in discerning macroevolutionary patterns in phenotypic means and rates, but differently from any other PCM allows comparing individual clades to each other, and provides rich information about trait evolution for all lineages in the tree.
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