Evidence map›Paper›PMID 30681413›Full record

ArticleeLife2019

FACT and Ubp10 collaborate to modulate H2B deubiquitination and nucleosome dynamics.

Melesse Nune, Michael T Morgan, Zaily Connell, Laura McCullough, Muhammad Jbara, Hao Sun, Ashraf Brik, Tim Formosa, Cynthia Wolberger

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
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  8. Histone H2B ubiquitylation: Connections to transcription and effects on chromatin structure.Biochimica et biophysica acta. Gene regulatory mechanisms · 2024
    Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Decoding histone ubiquitylation.Frontiers in cell and developmental biology · 2022
    Review
  14. Review
  15. Review
  16. The SAGA continues: The rise of cis- and trans-histone crosstalk pathways.Biochimica et biophysica acta. Gene regulatory mechanisms · 2021
    Review
  17. Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Melesse NuneProgram in Molecular Biophysics, Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID 0000-0002-3385-3320
Michael T MorganProgram in Molecular Biophysics, Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, United States.
Zaily ConnellDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, United States.
Laura McCulloughDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, United States.
Muhammad JbaraSchulich Faculty of Chemistry, Technion-Israel Institute of Technology, Haifa, Israel.
Hao SunSchulich Faculty of Chemistry, Technion-Israel Institute of Technology, Haifa, Israel.
Ashraf BrikSchulich Faculty of Chemistry, Technion-Israel Institute of Technology, Haifa, Israel.
Tim FormosaDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, United States.ORCID 0000-0002-8477-2483
Cynthia WolbergerProgram in Molecular Biophysics, Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID 0000-0001-8578-2969
Johns Hopkins University · USTechnion – Israel Institute of Technology · ILUniversity of Utah · US

Funding

PROGRAM IN MOLECULAR BIOPHYSICST32GM008403 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BARRICK, DOUGLAS E. · 1990 to 2019
$13.5M
Mechanistic studies of chromatin modification in transcription regulationR35GM130393 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Cynthia Wolberger · 2019 to 2026
$7.3M
Biochemical, Genetic, and Genomic Analysis of Nucleosome Reorganization by FACTR01GM064649 · NIGMS · UNIVERSITY OF UTAH · PI FORMOSA, TIMOTHY G · 2002 to 2022
$6.4M
Structure and Function of the SAGA Deubiquitinating ModuleR01GM095822 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI WOLBERGER, CYNTHIA · 2011 to 2018
$2.7M
Israel Council of Higher Education FellowshipNational Science Foundation Graduate Research FellowshipNIGMS NIH HHS GM064649NIGMS NIH HHS GM095822NIGMS NIH HHS R01 GM064649NIGMS NIH HHS R01 GM095822NIGMS NIH HHS R35 GM130393NIGMS NIH HHS T32 GM008403NIGMS NIH HHS Training Grant GM008403
6 · The paper itself

Abstract

Monoubiquitination of histone H2B (H2B-Ub) plays a role in transcription and DNA replication, and is required for normal localization of the histone chaperone, FACT. In yeast, H2B-Ub is deubiquitinated by Ubp8, a subunit of SAGA, and Ubp10. Although they target the same substrate, loss of Ubp8 and Ubp10 cause different phenotypes and alter the transcription of different genes. We show that Ubp10 has poor activity on yeast nucleosomes, but that the addition of FACT stimulates Ubp10 activity on nucleosomes and not on other substrates. Consistent with a role for FACT in deubiquitinating H2B in vivo, a FACT mutant strain shows elevated levels of H2B-Ub. Combination of FACT mutants with deletion of Ubp10, but not Ubp8, confers increased sensitivity to hydroxyurea and activates a cryptic transcription reporter, suggesting that FACT and Ubp10 may coordinate nucleosome assembly during DNA replication and transcription. Our findings reveal unexpected interplay between H2B deubiquitination and nucleosome dynamics.

Indexed as

UbiquitinationAllelesDNA-Binding ProteinsDNA ReplicationGene Expression Regulation, FungalHigh Mobility Group ProteinsHistonesHydroxyureaMutationNucleosomesPhenotypePromoter Regions, GeneticProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional Elongation FactorsDNA-Binding ProteinsFACT protein, S cerevisiaeHigh Mobility Group ProteinsHistonesHydroxyureaNucleosomesSaccharomyces cerevisiae ProteinsTranscriptional Elongation FactorsUbiquitinUbiquitin ThiolesteraseUBP10 protein, S cerevisiaebiochemistrychemical biologychromosomesdeubiquitinating enzymeDNA replicationgene expressionhistone chaperonenucleosome dynamicsS. cerevisiaetranscriptionubiquitin

Identifiers

PMID30681413
PMCPMC6372288
OpenAlexW2953143069

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.