Evidence map›Paper›PMID 30679600›Full record

ArticleScientific reports2019

Can enzyme proximity accelerate cascade reactions?

Andrij Kuzmak, Sheiliza Carmali, Eric von Lieres, Alan J Russell, Svyatoslav Kondrat

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Mechanisms and Effects of Substrate Channelling in Enzymatic Cascades.Methods in molecular biology (Clifton, N.J.) · 2022
    Review
  15. Article
  16. Review
  17. Review
  18. Cluster Channeling in Cascade Reactions.The journal of physical chemistry. B · 2021
    Article
  19. Article
  20. Channeling a complex question.Nature chemical biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andrij KuzmakDepartment for Theoretical Physics, I. Franko National University of Lviv, Lviv, Ukraine.ORCID 0000-0001-7222-2903
Sheiliza CarmaliDepartment of Chemistry, Aarhus University, 8000, Aarhus C, Denmark.ORCID 0000-0003-3436-4745
Eric von LieresForschungszentrum Jülich, IBG-1: Biotechnology, 52425, Jülich, Germany.ORCID 0000-0002-0309-8408
Alan J RussellCenter for Polymer-Based Protein Engineering, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, PA, 15213, USA.ORCID 0000-0001-5101-4371
Svyatoslav KondratForschungszentrum Jülich, IBG-1: Biotechnology, 52425, Jülich, Germany. svyatoslav.kondrat@gmail.com.ORCID 0000-0003-4448-0686

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The last decade has seen an exponential expansion of interest in conjugating multiple enzymes of cascades in close proximity to each other, with the overarching goal being to accelerate the overall reaction rate. However, some evidence has emerged that there is no effect of proximity channeling on the reaction velocity of the popular GOx-HRP cascade, particularly in the presence of a competing enzyme (catalase). Herein, we rationalize these experimental results quantitatively. We show that, in general, proximity channeling can enhance reaction velocity in the presence of competing enzymes, but in steady state a significant enhancement can only be achieved for diffusion-limited reactions or at high concentrations of competing enzymes. We provide simple equations to estimate the effect of channeling quantitatively and demonstrate that proximity can have a more pronounced effect under crowding conditions in vivo, particularly that crowding can enhance the overall rates of channeled cascade reactions.

Indexed as

AlgorithmsModels, TheoreticalBinding, CompetitiveCatalaseDiffusionGlucose OxidaseHorseradish PeroxidaseHydrogen PeroxideKineticsProtein BindingSubstrate SpecificityCatalaseGlucose OxidaseHorseradish PeroxidaseHydrogen Peroxide

Identifiers

PMID30679600
PMCPMC6345930

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.