ArticlePlant physiology2019
Proteome-wide, Structure-Based Prediction of Protein-Protein Interactions/New Molecular Interactions Viewer.
Abstract read
In one paragraph
Article in Plant physiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.
0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
24 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Interactomics in plant defence: progress and opportunities.Molecular biology reports · 2023Pooled it
- Article
- INTACT-based guard cell transcriptomes from a progressive drought time course reveal targets for modifying stomatal responses.The Plant cell · 2025Article
- 20 years of the Bio-Analytic Resource for Plant Biology.Nucleic acids research · 2025Article
- Confronting the data deluge: How artificial intelligence can be used in the study of plant stress.Computational and structural biotechnology journal · 2024Review
- Homologous mapping yielded a comprehensive predicted protein-protein interaction network for peanut (Arachis hypogaea L.).BMC plant biology · 2024Article
- MGPPI: multiscale graph neural networks for explainable protein-protein interaction prediction.Frontiers in genetics · 2024Article
- Structure-based prediction of protein-protein interaction network in rice.Genetics and molecular biology · 2024Article
- Narrow funnel-like interaction energy distribution is an indicator of specific protein interaction partner.iScience · 2023Article
- Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics.The Plant cell · 2023Article
- Characterization of Gene Regulatory Networks in Plants Using New Methods and Data Types.Methods in molecular biology (Clifton, N.J.) · 2023Article
- Deciphering Macromolecular Interactions Involved in Abiotic Stress Signaling: A Review of Bioinformatics Analysis.Methods in molecular biology (Clifton, N.J.) · 2023Review
- AGENT for Exploring and Analyzing Gene Regulatory Networks from Arabidopsis.Methods in molecular biology (Clifton, N.J.) · 2023Article
- From Affinity to Proximity Techniques to Investigate Protein Complexes in Plants.International journal of molecular sciences · 2021Review
- Anno genominis XX: 20 years of Arabidopsis genomics.The Plant cell · 2021Review
- Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function.Nature communications · 2021Article
- Metabolons, enzyme-enzyme assemblies that mediate substrate channeling, and their roles in plant metabolism.Plant communications · 2021Review
- The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions.Protein science : a publication of the Protein Society · 2021Article
- Data-mining bioinformatics: suggestingPlant signaling & behavior · 2020Article
- Network-based approaches for understanding gene regulation and function in plants.The Plant journal : for cell and molecular biology · 2020Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
17 authors.
Shaowei DongDepartment of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, 25 Willcocks St., University of Toronto, Toronto, Ontario M5S 3B2, Canada.
Vincent LauDepartment of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, 25 Willcocks St., University of Toronto, Toronto, Ontario M5S 3B2, Canada.
Richard SongDepartment of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, 25 Willcocks St., University of Toronto, Toronto, Ontario M5S 3B2, Canada.ORCID 0000-0001-9365-721X
Matthew IerulloDepartment of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, 25 Willcocks St., University of Toronto, Toronto, Ontario M5S 3B2, Canada.ORCID 0000-0001-9638-873X
Eddi EstebanDepartment of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, 25 Willcocks St., University of Toronto, Toronto, Ontario M5S 3B2, Canada.ORCID 0000-0001-9016-9202
Yingzhou WuDepartment of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, 25 Willcocks St., University of Toronto, Toronto, Ontario M5S 3B2, Canada.
Teeratham SiviengDepartment of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, 25 Willcocks St., University of Toronto, Toronto, Ontario M5S 3B2, Canada.
Hardeep NahalDepartment of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, 25 Willcocks St., University of Toronto, Toronto, Ontario M5S 3B2, Canada.ORCID 0000-0002-0774-2862
Allison GaudinierDepartment of Plant Biology and Genome Center, University of California, Davis, Davis, California 95616.ORCID 0000-0002-4350-6760
Asher PashaDepartment of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, 25 Willcocks St., University of Toronto, Toronto, Ontario M5S 3B2, Canada.ORCID 0000-0002-9315-0520
Rose OughtredInstitute for Biology I/Sammelbau Biologie II, RWTH Aachen University, Worringer Weg 3, 52074 Aachen, Germany.ORCID 0000-0002-6475-3373
Kara DolinskiInstitute for Biology I/Sammelbau Biologie II, RWTH Aachen University, Worringer Weg 3, 52074 Aachen, Germany.ORCID 0000-0002-7010-0264
Mike TyersThe Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada.
Siobhan M BradyDepartment of Plant Biology and Genome Center, University of California, Davis, Davis, California 95616.ORCID 0000-0001-9424-8055
Ruth GreneDepartment of Plant Pathology, Physiology, and Weed Science, 101H Price Hall, Mail Code: 0331, 170 Drillfield Drive, Blacksburg, Virginia 24061.
Björn UsadelInstitute for Biology I/Sammelbau Biologie II, RWTH Aachen University, Worringer Weg 3, 52074 Aachen, Germany.ORCID 0000-0003-0921-8041
Nicholas J ProvartDepartment of Cell & Systems Biology/Centre for the Analysis of Genome Evolution and Function, 25 Willcocks St., University of Toronto, Toronto, Ontario M5S 3B2, Canada nicholas.provart@utoronto.ca.ORCID 0000-0001-5551-7232
Funding
BioGRID: An open resource for biological interactions and network analysisR01OD010929 · OD · SINAI HEALTH SYSTEM · PI KARA DOLINSKI, Mike Tyers · 2012 to 2026
$13.9MNIH HHS R01 OD010929
Abstract
Determining the complete Arabidopsis (
Indexed as
Protein Interaction MapsSoftwareAlgorithmsArabidopsisArabidopsis ProteinsModels, MolecularMolecular Docking SimulationProteomeTwo-Hybrid System TechniquesArabidopsis ProteinsProteome
Identifiers
What OpenQuestion holds
Textmetadata
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Registered trials
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.