Evidence map›Paper›PMID 30678171›Full record

ArticleMolecules (Basel, Switzerland)2019

Identification of D Modification Sites by Integrating Heterogeneous Features in

Pengmian Feng, Zhaochun Xu, Hui Yang, Hao Lv, Hui Ding, Li Liu

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Machine learning applications in RNA modification sites prediction.Computational and structural biotechnology journal · 2021
    Review
  7. Predicting Cell Wall Lytic Enzymes Using Combined Features.Frontiers in bioengineering and biotechnology · 2020
    Article
  8. Molecular Computing and Bioinformatics.Molecules (Basel, Switzerland) · 2019
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Pengmian FengInnovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611730, China. fengpengmian@gmail.com.
Zhaochun XuKey Laboratory for Neuro-Information of Ministry of Education, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 610054, China. jdzxuzhaochun@163.com.ORCID 0000-0003-1799-5529
Hui YangKey Laboratory for Neuro-Information of Ministry of Education, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 610054, China. huiyang0325@163.com.
Hao LvKey Laboratory for Neuro-Information of Ministry of Education, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 610054, China. 13208188368@163.com.
Hui DingKey Laboratory for Neuro-Information of Ministry of Education, School of Life Science and Technology, Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 610054, China. hding@uestc.edu.cn.
Li LiuLaboratory of Theoretical Biophysics, School of Physical Science and Technology, Inner Mongolia University, Hohhot 010021, China. liliu2010imu@163.com.

Funding

National Nature Scientific Foundation of China 31771471
6 · The paper itself

Abstract

As an abundant post-transcriptional modification, dihydrouridine (D) has been found in transfer RNA (tRNA) from bacteria, eukaryotes, and archaea. Nonetheless, knowledge of the exact biochemical roles of dihydrouridine in mediating tRNA function is still limited. Accurate identification of the position of D sites is essential for understanding their functions. Therefore, it is desirable to develop novel methods to identify D sites. In this study, an ensemble classifier was proposed for the detection of D modification sites in the

Indexed as

Support Vector MachineAlgorithmsChemical PhenomenaNucleic Acid ConformationReproducibility of ResultsRNA, TransferSaccharomyces cerevisiaeUridineRNA, TransferUridinedihydrouridineensemble classifiernucleotide physicochemical propertypseudo dinucleotide compositionRNA secondary structure

Identifiers

PMID30678171
PMCPMC6384727

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.