Evidence map›Paper›PMID 30678100›Full record

ArticleBiomolecules2019

Proteomic and Phosphoproteomic Analysis in Tobacco Mosaic Virus-Infected Tobacco (Nicotiana tabacum).

Zi-Shu Lu, Qian-Si Chen, Qing-Xia Zheng, Juan-Juan Shen, Zhao-Peng Luo, Kai Fan, Sheng-Hao Xu, Qi Shen, Ping-Ping Liu

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
8.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Deciphering the Proteome and Phosphoproteome of Peanut (International journal of molecular sciences · 2025
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  8. Medicinal Fungi with Antiviral Effect.Molecules (Basel, Switzerland) · 2022
    Review
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  14. Application ofInternational journal of molecular sciences · 2020
    Article
  15. Ectopic expression of CPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Zi-Shu LuChemistry and Molecular Engineering, Zhengzhou University, Zhengzhou 450000, China. luzishu199422@163.com.ORCID 0000-0001-9382-9771
Qian-Si ChenZhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450000, China. m18339830149@163.com.
Qing-Xia ZhengZhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450000, China. zhengqingxia916@126.com.
Juan-Juan ShenChemistry and Molecular Engineering, Zhengzhou University, Zhengzhou 450000, China. m18339830149@163.com.
Zhao-Peng LuoZhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450000, China. luozhaopeng@163.com.
Kai FanZhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450000, China. fankaiuk@163.com.
Sheng-Hao XuKey Laboratory of Sensor Analysis of Tumor Marker, Ministry of Education, College of Chemistry and Molecular Engineering, Qingdao University of Science and Technology, Qingdao 266042, China. xushenghao@qust.edu.cn.
Qi ShenChemistry and Molecular Engineering, Zhengzhou University, Zhengzhou 450000, China. shenqi@zzu.edu.cn.
Ping-Ping LiuZhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450000, China. liupp@ztri.com.cn.
Tobacco Research Institute · CNZhengzhou University · CNQingdao University of Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tobacco mosaic virus (TMV) is a common source of biological stress that significantly affects plant growth and development. It is also useful as a model in studies designed to clarify the mechanisms involved in plant viral disease. Plant responses to abiotic stress were recently reported to be regulated by complex mechanisms at the post-translational modification (PTM) level. Protein phosphorylation is one of the most widespread and major PTMs in organisms. Using immobilized metal ion affinity chromatography (IMAC) enrichment, high-pH C18 chromatography fraction, and high-accuracy mass spectrometry (MS), a set of proteins and phosphopeptides in both TMV-infected tobacco and control tobacco were identified. A total of 4905 proteins and 3998 phosphopeptides with 3063 phosphorylation sites were identified. These 3998 phosphopeptides were assigned to 1311 phosphoproteins, as some proteins carried multiple phosphorylation sites. Among them, 530 proteins and 337 phosphopeptides corresponding to 277 phosphoproteins differed between the two groups. There were 43 upregulated phosphoproteins, including phosphoglycerate kinase, pyruvate phosphate dikinase, protein phosphatase 2C, and serine/threonine protein kinase. To the best of our knowledge, this is the first phosphoproteomic analysis of leaves from a tobacco cultivar, K326. The results of this study advance our understanding of tobacco development and TMV action at the protein phosphorylation level.

Indexed as

ProteomicsChromatography, AffinityNicotianaPhosphorylationTobacco Mosaic Virusisobaric tags for relative and absolute quantitation (iTRAQ) labelingnano-LC–MS/MSphosphoproteomicproteomictobaccotobacco mosaic virus (TMV)

Identifiers

PMID30678100
PMCPMC6406717
OpenAlexW2914794043

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.