Evidence map›Paper›PMID 30677207›Full record

ArticleGenes, chromosomes & cancer2019

Comprehensive molecular and clinicopathological analysis of vascular malformations: A study of 319 cases.

Roel W Ten Broek, Astrid Eijkelenboom, Carine J M van der Vleuten, Eveline J Kamping, Marleen Kets, Bas H Verhoeven, Katrien Grünberg, Leo J Schultze Kool, Bastiaan B J Tops, Marjolijn J L Ligtenberg and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Genes, chromosomes & cancer, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 83 citations in OpenAlex.

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  7. Semaphorin 3A and 3F Promote Lumen Expansion in TIE2-Mutated Venous Malformation.Arteriosclerosis, thrombosis, and vascular biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Roel W Ten BroekDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID 0000-0001-7467-5818
Astrid EijkelenboomDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Carine J M van der VleutenDepartment of Dermatology, Radboud University Medical Center, Nijmegen, The Netherlands.
Eveline J KampingDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Marleen KetsRadboudumc Expertise Center for Hemangiomas and Congenital Vascular Anomalies Nijmegen (Hecovan), Radboud University Medical Center, Nijmegen, The Netherlands.
Bas H VerhoevenRadboudumc Expertise Center for Hemangiomas and Congenital Vascular Anomalies Nijmegen (Hecovan), Radboud University Medical Center, Nijmegen, The Netherlands.
Katrien GrünbergDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Leo J Schultze KoolRadboudumc Expertise Center for Hemangiomas and Congenital Vascular Anomalies Nijmegen (Hecovan), Radboud University Medical Center, Nijmegen, The Netherlands.
Bastiaan B J TopsPrincess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Marjolijn J L LigtenbergDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Uta FluckeDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID 0000-0003-0315-4307
Radboud University Nijmegen · NLPrincess Máxima Center · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vascular malformations are part of overgrowth syndromes characterized by somatic mosaic mutations or rarely by germline mutations. Due to their similarities and diversity, clinicopathological classification can be challenging. A comprehensive targeted Next Generation Sequencing screen using Unique Molecular Identifiers with a technical sensitivity of 1% mutant alleles was performed for frequently mutated positions in ≥21 genes on 319 formalin-fixed paraffin-embedded samples. In 132 out of 319 cases pathogenic mosaic mutations were detected affecting genes previously linked to vascular malformations e.g. PIK3CA (n=80), TEK (TIE2) (n=11), AKT1 (n=1), GNAQ (n=7), GNA11 (n=4), IDH1 (n=3), KRAS (n=9), and NRAS (n=1). Six cases harbored a combination of mutations in PIK3CA and in GNA11 (n=2), GNAQ (n=2), or IDH1 (n=2). Aberrations in PTEN and RASA1 with a variant allele frequency approaching 50% suggestive of germline origin were identified in six out of 102 cases tested; four contained a potential second hit at a lower allele frequency. Ninety-one of the total 142 pathogenic mutations were present at a variant allele frequency <10% illustrating the importance of sensitive molecular analysis. Clinicopathological characteristics showed a broad spectrum and overlap when correlated with molecular data. Sensitive screening of recurrently mutated genes in vascular malformations may help to confirm the diagnosis and reveals potential therapeutic options with a significant contribution of PIK3CA/mTOR and RAS-MAPK pathway mutations. The co-existence of two activating pathogenic mutations in parallel pathways illustrates potential treatment challenges and underlines the importance of multigene testing. Detected germline mutations have major clinical impact.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseasePhenotypeAgedAged, 80 and overAllelesBiopsyClass I Phosphatidylinositol 3-KinasesFemaleGene FrequencyGenotypeHigh-Throughput Nucleotide SequencingHumansMaleMutationVascular MalformationsClass I Phosphatidylinositol 3-KinasesPIK3CA protein, humanmolecular geneticsmosaic mutationsovergrowth syndromesvascular malformations

Identifiers

PMID30677207
PMCPMC6594036
OpenAlexW2912947723

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.