Evidence map›Paper›PMID 30676741›Full record

ArticleJournal of medicinal chemistry2019

Structural Basis of Altered Potency and Efficacy Displayed by a Major in Vivo Metabolite of the Antidiabetic PPARγ Drug Pioglitazone.

Sarah A Mosure, Jinsai Shang, Jerome Eberhardt, Richard Brust, Jie Zheng, Patrick R Griffin, Stefano Forli, Douglas J Kojetin

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 35 citations in OpenAlex.

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  11. Quantitative structural assessment of graded receptor agonism.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Sarah A Mosure
Jerome EberhardtDepartment of Integrative Structural and Computational Biology , The Scripps Research Institute , La Jolla , California 92037 , United States.
Richard Brust
Jie Zheng
Patrick R GriffinORCID 0000-0002-3404-690X
Stefano ForliDepartment of Integrative Structural and Computational Biology , The Scripps Research Institute , La Jolla , California 92037 , United States.ORCID 0000-0002-5964-7111
Douglas J KojetinORCID 0000-0001-8058-6168
Scripps Research Institute · US

Funding

AutoDock Suite: Next Generation Environment for Drug DesignR01GM069832 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI FORLI, STEFANO · 2004 to 2025
$10.9M
Molecular Characterization of Novel Insulin SensitizersR01DK105825 · NIDDK · SCRIPPS FLORIDA · PI GRIFFIN, PATRICK ROBERT · 2015 to 2019
$2.9M
Structure and Function of Alternate-Site Binding of Anti-Diabetic PPARG LigandsR01DK101871 · NIDDK · SCRIPPS FLORIDA · PI KOJETIN, DOUGLAS · 2014 to 2018
$2.1M
Structural Analysis of Corepressor Binding to PPARγF32DK108442 · NIDDK · SCRIPPS FLORIDA · PI BRUST, RICHARD JAMES · 2016 to 2018
$178k
NIDDK NIH HHS F32 DK108442NIDDK NIH HHS R01 DK101871NIDDK NIH HHS R01 DK105825NIGMS NIH HHS R01 GM069832
6 · The paper itself

Abstract

Pioglitazone (Pio) is a Food and Drug Administration-approved drug for type-2 diabetes that binds and activates the nuclear receptor peroxisome proliferator-activated receptor γ (PPARγ), yet it remains unclear how in vivo Pio metabolites affect PPARγ structure and function. Here, we present a structure-function comparison of Pio and its most abundant in vivo metabolite, 1-hydroxypioglitazone (PioOH). PioOH displayed a lower binding affinity and reduced potency in co-regulator recruitment assays. X-ray crystallography and molecular docking analysis of PioOH-bound PPARγ ligand-binding domain revealed an altered hydrogen bonding network, including the formation of water-mediated bonds, which could underlie its altered biochemical phenotype. NMR spectroscopy and hydrogen/deuterium exchange mass spectrometry analysis coupled to activity assays revealed that PioOH better stabilizes the PPARγ activation function-2 (AF-2) co-activator binding surface and better enhances co-activator binding, affording slightly better transcriptional efficacy. These results indicating that Pio hydroxylation affects its potency and efficacy as a PPARγ agonist contributes to our understanding of PPARγ-drug metabolite interactions.

Indexed as

Binding SitesHEK293 CellsHumansHydrogen BondingHypoglycemic AgentsMolecular Docking SimulationPioglitazonePPAR gammaProtein BindingProtein ConformationProtein DomainsStereoisomerismHypoglycemic AgentsPioglitazonePPAR gamma

Identifiers

PMID30676741
PMCPMC6898968
OpenAlexW2912709516

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.