Evidence map›Paper›PMID 30675318›Full record

ArticleHereditary cancer in clinical practice2019

Implementation of massive sequencing in the genetic diagnosis of hereditary cancer syndromes: diagnostic performance in the Hereditary Cancer Programme of the Valencia Community (FamCan-NGS).

Marta Ramírez-Calvo, Zaida García-Casado, Antonio Fernández-Serra, Inmaculada de Juan, Sarai Palanca, Silvestre Oltra, José Luis Soto, Adela Castillejo, Víctor M Barbera, Ma José Juan-Fita and 7 more

Open access · goldAbstract read
In one paragraph

Article in Hereditary cancer in clinical practice, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. GermlineJournal of personalized medicine · 2024
    Article
  2. A Novel FLCN Variant in a Suspected Birt-Hogg-Dubè Syndrome Patient.International journal of molecular sciences · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Case Report: AFrontiers in oncology · 2022
    Article
  8. Observational
  9. Article
  10. Inherited lung cancer: a review.Ecancermedicalscience · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 1 country.

Marta Ramírez-Calvo *1Laboratory of Molecular Biology, Fundación Instituto Valenciano de Oncología, C/Prof. Beltrán Báguena, 8-11, 46009 Valencia, Spain.ORCID 0000-0002-7179-5360
Zaida García-Casado *1Laboratory of Molecular Biology, Fundación Instituto Valenciano de Oncología, C/Prof. Beltrán Báguena, 8-11, 46009 Valencia, Spain.
Antonio Fernández-Serra1Laboratory of Molecular Biology, Fundación Instituto Valenciano de Oncología, C/Prof. Beltrán Báguena, 8-11, 46009 Valencia, Spain.
Inmaculada de Juan2Laboratory of Molecular Biology, Service of Clinical Analysis, Hospital Universitario y Politécnico La Fe, Valencia, Spain.
Sarai Palanca2Laboratory of Molecular Biology, Service of Clinical Analysis, Hospital Universitario y Politécnico La Fe, Valencia, Spain.
Silvestre Oltra3Genetics Unit, Hospital Universitario y Politécnico La Fe, Valencia, Spain.
José Luis Soto4Molecular Genetics Unit, Hospital General Universitario de Elche, Elche, Spain.
Adela Castillejo4Molecular Genetics Unit, Hospital General Universitario de Elche, Elche, Spain.
Víctor M Barbera4Molecular Genetics Unit, Hospital General Universitario de Elche, Elche, Spain.
Ma José Juan-Fita5Unit of Genetic Counselling in Cancer, Fundación Instituto Valenciano de Oncología, Valencia, Spain.
Ángel Segura6Unit of Genetic Counselling in Cancer, Hospital Universitario y Politécnico La Fe, Valencia, Spain.
Isabel Chirivella7Unit of Genetic Counselling in Cancer, Hospital Clínico, Valencia, Spain.
Ana Beatriz Sánchez8Unit of Genetic Counselling in Cancer, Hospital General de Elche, Elche, Spain.
Isabel Tena9Unit of Genetic Counselling in Cancer, Hospital General de Castellón, Castellón, Spain.
Carolina ChaparroCancer and Public Health Area, FISABIO-Public Health, Valencia, Spain.
Dolores SalasGeneral Directorate Public Health, Valencia, Spain.
José Antonio López-Guerrero1Laboratory of Molecular Biology, Fundación Instituto Valenciano de Oncología, C/Prof. Beltrán Báguena, 8-11, 46009 Valencia, Spain.
Fundación Instituto Valenciano de Oncología · ESHospital General Universitario de Elche · ESHospital Universitari i Politècnic La Fe · ESFundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana · ESGeneralitat Valenciana · ESHospital Clínico Universitario de Valencia · ESHospital General Universitari de Castelló · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundApproximately 5 to 10% of all cancers are caused by inherited germline mutations, many of which are associated with different Hereditary Cancer Syndromes (HCS). In the context of the Program of Hereditary Cancer of the Valencia Community, individuals belonging to specific HCS and their families receive genetic counselling and genetic testing according to internationally established guidelines. The current diagnostic approach is based on sequencing a few high-risk genes related to each HCS; however, this method is time-consuming, expensive and does not achieve a confirmatory genetic diagnosis in many cases. This study aims to test the level of improvement offered by a Next Generation Sequencing (NGS) gene-panel compared to the standard approach in a diagnostic reference laboratory setting.

methodsA multi-gene NGS panel was used to test a total of 91 probands, previously classified as non-informative by analysing the high-risk genes defined in our guidelines.

resultsNineteen deleterious mutations were detected in 16% of patients, some mutations were found in already-tested high-risk genes (

conclusionsOverall, our findings reclassify several index cases into different HCS, and change the mutational status of 14 cases from non-informative to gene mutation carriers. In conclusion, we highlight the necessity of incorporating validated multi-gene NGS panels into the HCSs diagnostic routine to increase the performance of genetic diagnosis.

Indexed as

Diagnostic accuracyGenetic counsellingHereditary Cancer syndromeMulti-gene panelNext generation sequencing

Identifiers

PMID30675318
PMCPMC6339395
OpenAlexW2916763431

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.