ArticleMobile DNA2019
The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (
Article in Mobile DNA, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed, 47 citations in OpenAlex.
- Factors determining chromosomal localization of transposable elements in plants.Plant biology (Stuttgart, Germany) · 2025Review
- A complete telomere-to-telomere assembly of the Spinacia oleracea genome reveals Y chromosome evolution and centromere landscape.Plant communications · 2025Article
- Ecological Niche Adaptations Influence Transposable Element Dynamics in Pollinating and Non-Pollinating Fig Wasps.Ecology and evolution · 2025Article
- A dominant role of transcriptional regulation during the evolution of CNature communications · 2025Article
- Chromosome distribution of four LTR retrotransposons and 18 S rDNA in coffea eugenioides.Scientific reports · 2025Article
- Combined metabolomic and transcriptomic analysis reveals the key genes for triterpenoid biosynthesis in Cyclocarya paliurus.BMC genomics · 2024Article
- Effect of Growth Stages and Lactic Acid Fermentation on Anti-Nutrients and Nutritional Attributes of Spinach (Microorganisms · 2023Article
- Oligo-FISH ofInternational journal of molecular sciences · 2023Article
- Genome-wide analysis of transposable elements and satellite DNA inFrontiers in plant science · 2023Article
- Impact of LTR-Retrotransposons on Genome Structure, Evolution, and Function in Curcurbitaceae Species.International journal of molecular sciences · 2022Article
- Development and applications of a collection of single copy gene-based cytogenetic DNA markers in garden asparagus.Frontiers in plant science · 2022Article
- Full-length LTR retroelements in Capsicum annuum revealed a few species-specific family bursts with insertional preferences.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021Article
- Using carrot centromeric repeats to study karyotype relationships in the genus Daucus (Apiaceae).BMC genomics · 2021Article
- Multiple independent recombinations led to hermaphroditism in grapevine.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- Nutritional characterization and food value addition properties of dehydrated spinach powder.Food science & nutrition · 2021Article
- The Genomics of Plant Satellite DNA.Progress in molecular and subcellular biology · 2021Review
- Article
- DNA methylation and its effects on gene expression during primary to secondary growth in poplar stems.BMC genomics · 2020Article
- Sex Chromosome Evolution: So Many Exceptions to the Rules.Genome biology and evolution · 2020Review
- Article
Corrections and comments
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundRepetitive sequences, including transposable elements (TEs) and satellite DNAs, occupy a considerable portion of plant genomes. Analysis of the repeat fraction benefits the understanding of genome structure and evolution. Spinach (
resultsWe extensively analyzed the repetitive components of draft spinach genome, especially TEs and satellites, by different strategies. A total of 16,002 full-length TEs were identified. Among the most abundant long terminal repeat (LTR) retrotransposons (REs),
conclusionsWe reliably annotated the TE fraction of the draft genome of spinach. FISH analysis indicates that Ogre/Tat lineage and the sex chromosome-specific satellites DNAs might participate in sex chromosome formation and evolution. Based on FISH signals of microsatellites, together with 45S rDNA, a fine karyotype of spinach was established. This study improves our knowledge of repetitive sequence organization in spinach genome and aids in accurate spinach karyotype construction.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.