Evidence map›Paper›PMID 30674989›Full record

ArticleOncogene2019

Thymine DNA glycosylase as a novel target for melanoma.

Pietro Mancuso, Rossella Tricarico, Vikram Bhattacharjee, Laura Cosentino, Yuwaraj Kadariya, Jaroslav Jelinek, Emmanuelle Nicolas, Margret Einarson, Neil Beeharry, Karthik Devarajan and 12 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Oncogene, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  7. Genetic effects on the skin methylome in healthy older twins.American journal of human genetics · 2024
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  16. Energy Landscapes for Base-Flipping in a Model DNA Duplex.The journal of physical chemistry. B · 2022
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 3 countries.

Pietro Mancuso *Cancer Epigenetics Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA.
Rossella Tricarico *Cancer Epigenetics Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA.
Vikram BhattacharjeeCancer Biology Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA.
Laura CosentinoCancer Epigenetics Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA.
Yuwaraj KadariyaCancer Biology Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA.
Jaroslav JelinekFels Institute for Cancer and Molecular Biology, Temple University School of Medicine, Philadelphia, PA, 19140, USA.
Emmanuelle NicolasCancer Epigenetics Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA.
Margret EinarsonCancer Epigenetics Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA.
Neil BeeharryCancer Biology Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA.
Karthik DevarajanDepartment of Biostatistics, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA.
Richard A KatzCancer Epigenetics Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA.
Dorjbal G DorjsurenDivision of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA.
Hongmao SunDivision of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA.
Anton SimeonovDivision of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, 20850, USA.
Antonio GiordanoDepartment of Medical Biotechnologies, Universita' degli Studi di Siena, Siena, Italy.
Joseph R TestaCancer Biology Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA.ORCID http://orcid.org/0000-0003-1301-5175
Guillaume DavidsonInstitut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM/ULP, 67404, Illkirch, France.
Irwin DavidsonInstitut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM/ULP, 67404, Illkirch, France.
Lionel LarueInstitut Curie, PSL Research University, INSERM U1021, Normal and Pathological Development of Melanocytes, 91405, Orsay, France.
Robert W SobolDepartment of Oncologic Sciences, Mitchell Cancer Institute, University of South Alabama, Mobile, AL, 36604, USA.ORCID http://orcid.org/0000-0001-7385-3563
Timothy J YenCancer Biology Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA.
Alfonso BellacosaCancer Epigenetics Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111, USA. Alfonso.Bellacosa@fccc.edu.
Fox Chase Cancer Center · USCentre National de la Recherche Scientifique · FRNational Institutes of Health · USUniversity of Siena · ITTemple University · USUSA Mitchell Cancer Institute · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Dietmar J Kappes · 1985 to 2026
$138.8M
The MED1 Protein in DNA Damage Response and RepairR01CA078412 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI BELLACOSA, ALFONSO · 2004 to 2014
$3.7M
Novel approaches to enhance tumor cell cytotoxicity of alkylating agentsR01CA148629 · NCI · UNIVERSITY OF SOUTH ALABAMA · PI SOBOL, ROBERT W · 2010 to 2021
$3.4M
Pathogenesis of Malignant Mesothelioma by the Human Polycomb Complex BAP1-ASXLR01CA175691 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI RAUSCHER III, FRANK JOSEPH, TESTA, JOSEPH R. · 2014 to 2018
$2.7M
Margret B. Einarson, Ph.D., Manager, High Throughput Screening Facility, Fox Chase Cancer CenterR50CA211479 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI EINARSON, MARGRET B · 2017 to 2021
$636k
NEW HUMAN DNA REPAIR ENDONUCLEASER29CA078412 · NCI · FOX CHASE CANCER CENTER · PI BELLACOSA, ALFONSO · 1998 to 2002
$619k
TDG as a novel target to enhance gemcitabine killing of pancreatic cancer cellsR21CA191956 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI BELLACOSA, ALFONSO, YEN, TIMOTHY · 2015 to 2016
$427k
Quantitative Real-Time DNA Repair Analysis ToolsR43ES025138 · NIEHS · TREVIGEN, INC. · PI GEORGE, JAY, SOBOL, ROBERT W · 2014 to 2014
$202k
NCI NIH HHS P30 CA006927NCI NIH HHS R01 CA078412NCI NIH HHS R01 CA148629NCI NIH HHS R01 CA175691NCI NIH HHS R21 CA191956NCI NIH HHS R29 CA078412NCI NIH HHS R50 CA211479NIEHS NIH HHS R43 ES025138U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA150492
6 · The paper itself

Abstract

Melanoma is an aggressive neoplasm with increasing incidence that is classified by the NCI as a recalcitrant cancer, i.e., a cancer with poor prognosis, lacking progress in diagnosis and treatment. In addition to conventional therapy, melanoma treatment is currently based on targeting the BRAF/MEK/ERK signaling pathway and immune checkpoints. As drug resistance remains a major obstacle to treatment success, advanced therapeutic approaches based on novel targets are still urgently needed. We reasoned that the base excision repair enzyme thymine DNA glycosylase (TDG) could be such a target for its dual role in safeguarding the genome and the epigenome, by performing the last of the multiple steps in DNA demethylation. Here we show that TDG knockdown in melanoma cell lines causes cell cycle arrest, senescence, and death by mitotic alterations; alters the transcriptome and methylome; and impairs xenograft tumor formation. Importantly, untransformed melanocytes are minimally affected by TDG knockdown, and adult mice with conditional knockout of Tdg are viable. Candidate TDG inhibitors, identified through a high-throughput fluorescence-based screen, reduced viability and clonogenic capacity of melanoma cell lines and increased cellular levels of 5-carboxylcytosine, the last intermediate in DNA demethylation, indicating successful on-target activity. These findings suggest that TDG may provide critical functions specific to cancer cells that make it a highly suitable anti-melanoma drug target. By potentially disrupting both DNA repair and the epigenetic state, targeting TDG may represent a completely new approach to melanoma therapy.

Indexed as

AnimalsCell CycleCell Line, TumorCell ProliferationCytosineDNA MethylationEnzyme InhibitorsFemaleGene Expression Regulation, NeoplasticHumansMelanomaMelanoma, ExperimentalMice, KnockoutMice, SCIDMice, TransgenicMolecular Targeted Therapy5-carboxylcytosineCytosineEnzyme InhibitorsThymine DNA Glycosylase

Identifiers

PMID30674989
PMCPMC6563616
OpenAlexW2914027553

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.