Evidence map›Paper›PMID 30674982›Full record

ArticleJournal of human genetics2019

Spectrum of ARSA variations in Asian Indian patients with Arylsulfatase A deficient metachromatic leukodystrophy.

Dhanya Lakshmi Narayanan, Divya Matta, Neerja Gupta, Madhulika Kabra, Prajnya Ranganath, Shagun Aggarwal, Shubha R Phadke, Chaitanya Datar, Kalpana Gowrishankar, Mahesh Kamate and 2 more

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In one paragraph

Article in Journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it, 33 citations in OpenAlex.

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  11. Toward newborn screening of metachromatic leukodystrophy: results from analysis of over 27,000 newborn dried blood spots.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Dhanya Lakshmi NarayananDepartment of Medical Genetics, Nizam's Institute of Medical Sciences, Hyderabad, India.
Divya MattaDiagnostics Division, Centre for DNA Fingerprinting and Diagnostics, Hyderabad, India.ORCID http://orcid.org/0000-0002-1627-3252
Neerja GuptaDepartment of Pediatrics, Division of Genetics, All India Institute of Medical Sciences, New Delhi, India.
Madhulika KabraDepartment of Pediatrics, Division of Genetics, All India Institute of Medical Sciences, New Delhi, India.
Prajnya RanganathDepartment of Medical Genetics, Nizam's Institute of Medical Sciences, Hyderabad, India.
Shagun AggarwalDepartment of Medical Genetics, Nizam's Institute of Medical Sciences, Hyderabad, India.
Shubha R PhadkeDepartment of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Lucknow, India.
Chaitanya DatarSahyadri Medical Genetics and Tissue Engineering Facility (SMGTEF), Pune, India.
Kalpana GowrishankarDepartment of Medical Genetics, Apollo Children's Hospital, Chennai, India.
Mahesh KamateDivision of Pediatric Neurology, Department of Pediatrics, KAHER's J N Medical College, Belagavi, India.
Jamal Mohammed Nurul JainDiagnostics Division, Centre for DNA Fingerprinting and Diagnostics, Hyderabad, India.
Ashwin DalalDiagnostics Division, Centre for DNA Fingerprinting and Diagnostics, Hyderabad, India. ashwindalal@gmail.com.
Centre for DNA Fingerprinting and Diagnostics · INNizam's Institute of Medical Sciences · INAll India Institute of Medical Sciences · INApollo Hospitals · INSahyadri Hospital · INSanjay Gandhi Post Graduate Institute of Medical Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metachromatic leukodystrophy due to Arylsulfatase A enzyme deficiency is an autosomal recessive disorder caused by biallelic variations in ARSA gene. Till date 186 variations have been reported in ARSA gene worldwide, but the variation spectrum in India is not known. The aim of this study was to identify the variation profile in Indian patients presenting with features of Arylsulfatase A deficient metachromatic leukodystrophy. We sequenced the ARSA gene in 51 unrelated families and identified 36 variants out of which 16 were novel. The variations included 23 missense, 3 nonsense, and 6 frameshift variants (3 single-base deletions and 3 single-base duplications), 1 indel, one 3 bp deletion, and 2 splice site variations. The pathogenicity of the novel variations was inferred with the help of mutation prediction softwares like MutationTaster, SIFT, Polyphen-2, PROVEAN, and HANSA. The effects of the identified sequence variants on the protein structure were studied using in silico methods. The most common variation was c.931 C > T(p.Arg311*), found in 11.4% (14 out of 122 alleles) of the tested individuals. To the best of our knowledge, this study is the first of its kind in India with respect to the size of the cohort and the molecular diagnostic method used and one of the largest cohorts of metachromatic leukodystrophy studied till date.

Indexed as

AdolescentAdultAllelesAsian PeopleCerebroside-SulfataseChildChild, PreschoolFemaleGenotypeHumansIndiaInfantLeukodystrophy, MetachromaticMaleMutationRNA SplicingCerebroside-Sulfatase

Identifiers

PMID30674982
OpenAlexW2914306070

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.