ArticleScientific reports2019
Genetic diversity and population structure analysis of Saccharum and Erianthus genera using microsatellite (SSR) markers.
Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Phenotype-genotype association for the identification of resistance to stem borers (Frontiers in plant science · 2026Article
- Genetic Diversity and Population Structure of Shanlan Upland Rice Germplasm Based on SSR Markers.Plants (Basel, Switzerland) · 2025Article
- Unraveling Phylogenetic Relationships Among SixGenes · 2025Article
- Comparative assessment of species identification methods for EuropeanFrontiers in plant science · 2025Article
- Article
- Genetic association analysis in sugarcane (Saccharum spp.) for sucrose accumulation in humid environments in Colombia.BMC plant biology · 2024Article
- Genetic diversity and population structure of sugarcane introgressed hybrids by SSR markers.3 Biotech · 2023Article
- Transcriptomic and Proteomic Landscape of Sugarcane Response to Biotic and Abiotic Stressors.International journal of molecular sciences · 2023Review
- Genetic diversity analysis of volunteer wheat based on SSR markers.Journal of genetics · 2023Article
- Small cardamom genome: development and utilization of microsatellite markers from a draft genome sequence ofFrontiers in plant science · 2023Article
- De novo assembly of Iron-Heart Cunninghamia lanceolata transcriptome and EST-SSR marker development for genetic diversity analysis.PloS one · 2023Article
- Review
- SSR individual identification system construction and population genetics analysis for Chamaecyparis formosensis.Scientific reports · 2022Article
- A pipeline for effectively developing highly polymorphic simple sequence repeats markers based on multi-sample genomic data.Ecology and evolution · 2022Article
- SMRT Sequencing Reveals Candidate Genes and Pathways With Medicinal Value inFrontiers in genetics · 2022Article
- Article
- Population structure and genetic diversity characterization of soybean for seed longevity.PloS one · 2022Article
- Reproductive compatibility in Capsicum is not necessarily reflected in genetic or phenotypic similarity between species complexes.PloS one · 2021Article
- Low genetic diversity indicating the threatened status of Rhizophora apiculata (Rhizophoraceae) in Malaysia: declined evolution meets habitat destruction.Scientific reports · 2020Article
- The Genetic Diversity of Cranberry Crop Wild Relatives,Plants (Basel, Switzerland) · 2020Article
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6 authors.
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No grant is acknowledged in the PubMed record.
Abstract
In order to understand the genetic diversity and structure within and between the genera of Saccharum and Erianthus, 79 accessions from five species (S. officinarum, S. spontaneum, S. robustum, S. barberi, S. sinense), six accessions of E. arundinaceus, and 30 Saccharum spp. hybrids were analyzed using 21 pairs of fluorescence-labeled highly poloymorphic SSR primers and a capillary electrophoresis (CE) detection system. A total of 167 polymorphic SSR alleles were identified by CE with a mean value of polymorphic information content (PIC) of 0.92. Genetic diversity parameters among these 115 accessions revealed that Saccharum spp. hybrids were more diverse than those of Saccharum and Erianthus species. Based on the SSR data, the 115 accessions were classified into seven main phylogenetic groups, which corresponded to the Saccharum and Erianthus genera through phylogenetic analysis and principle component analysis (PCA). We propose that seven core SSR primer pairs, namely, SMC31CUQ, SMC336BS, SMC597CS, SMC703BS, SMC24DUQ, mSSCIR3, and mSSCIR43, may have a wide appicability in genotype identification of Saccharum species and Saccharum spp. hybrids. Thus, the information from this study contibites to manage sugarcane genetic resources.
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