Evidence map›Paper›PMID 30674925›Full record

ArticleScientific reports2019

Smooth Muscle Transcriptome Browser: offering genome-wide references and expression profiles of transcripts expressed in intestinal SMC, ICC, and PDGFRα

Adrienne Breland, Se Eun Ha, Brian G Jorgensen, Byungchang Jin, Treg A Gardner, Kenton M Sanders, Seungil Ro

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Phenotypic switching of gastrointestinal smooth muscle cells and the regulatory role of macrophages: a literature review.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
    Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Differential responses to prostaglandins in the circular and longitudinal muscle layers of the murine ileum.American journal of physiology. Gastrointestinal and liver physiology · 2025
    Article
  7. Article
  8. Interstitial cells of the sip syncytium regulate basal membrane potential in murine gastric corpus.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Adrienne BrelandDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, USA.
Se Eun HaDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, USA.
Brian G JorgensenDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, USA.
Byungchang JinDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, USA.
Treg A GardnerDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, USA.
Kenton M SandersDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, USA.
Seungil RoDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, USA. sro@med.unr.edu.ORCID 0000-0003-0861-8334

Funding

Tissue, Cell and Tissue Culture CoreP01DK041315 · NIDDK · UNIVERSITY OF NEVADA RENO · PI KEEF, KATHLEEN D · 1989 to 2018
$26.3M
Inhibitory mechanisms of PDGFRa+ interstitial cells in gastrointestinal motilityR01DK091336 · NIDDK · UNIVERSITY OF NEVADA RENO · PI KURAHASHI, MASAAKI · 2013 to 2022
$4.3M
Roles of DNA methylation in gastrointestinal smooth muscle cellsR01DK094886 · NIDDK · UNIVERSITY OF NEVADA RENO · PI RO, SEUNGIL · 2012 to 2016
$1.5M
Engineering of functional smooth muscle cells from gastrointestinal myofibroblastR01DK103055 · NIDDK · UNIVERSITY OF NEVADA RENO · PI RO, SEUNGIL · 2015 to 2018
$1.3M
NIDDK NIH HHS P01 DK041315NIDDK NIH HHS R01 DK091336NIDDK NIH HHS R01 DK094886NIDDK NIH HHS R01 DK103055
6 · The paper itself

Abstract

Transcriptome data on the quantitative numbers of transcriptional variants expressed in primary cells offer essential clues into specific cellular functions and biological processes. We have previously collected transcriptomes from primary smooth muscle cells (SMC), interstitial cells of Cajal (ICC), and PDGFRα

Indexed as

Gene Expression ProfilingSoftwareTranscriptomeAnimalsColonInterstitial Cells of CajalIntestinal MucosaJejunumMiceMuscle, SmoothMyocytes, Smooth Muscle

Identifiers

PMID30674925
PMCPMC6344548

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.