Evidence map›Paper›PMID 30674888›Full record

ArticleNature communications2019

Near-atomic structure of a giant virus.

Qianglin Fang, Dongjie Zhu, Irina Agarkova, Jagat Adhikari, Thomas Klose, Yue Liu, Zhenguo Chen, Yingyuan Sun, Michael L Gross, James L Van Etten and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 75 citations in OpenAlex.

  1. Review
  2. Why did some viruses evolve to be giants while others did not?Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
  5. Review
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  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Integrative Approaches to Study Virus Structures.Sub-cellular biochemistry · 2024
    Review
  15. Review
  16. Review
  17. Surface fibrils on the particles of nucleocytoviruses: A review.Experimental biology and medicine (Maywood, N.J.) · 2023
    Review
  18. Article
  19. Article
  20. Computational methods forFrontiers in cellular and infection microbiology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Qianglin FangDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Dongjie ZhuNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China.ORCID http://orcid.org/0000-0002-5052-1782
Irina AgarkovaDepartment of Plant Pathology and Nebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, NE, 68583-0900, USA.
Jagat AdhikariDepartment of Chemistry, Box 1134, Washington University, One Brookings Drive, St. Louis, MO, 63130, USA.
Thomas KloseDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.ORCID http://orcid.org/0000-0002-2150-9792
Yue LiuDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.ORCID http://orcid.org/0000-0002-8759-5478
Zhenguo ChenDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Yingyuan SunDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Michael L GrossDepartment of Chemistry, Box 1134, Washington University, One Brookings Drive, St. Louis, MO, 63130, USA.ORCID http://orcid.org/0000-0003-1159-4636
James L Van EttenDepartment of Plant Pathology and Nebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, NE, 68583-0900, USA.
Xinzheng ZhangNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China. xzzhang@ibp.ac.cn.ORCID http://orcid.org/0000-0002-0114-0270
Michael G RossmannDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA. mr@purdue.edu.
Purdue University West Lafayette · USUniversity of Nebraska–Lincoln · USWashington University in St. Louis · USInstitute of Biophysics · CNUniversity of Science and Technology of China · CN

Funding

TrainingP41GM103422 · NIGMS · WASHINGTON UNIVERSITY · PI YARASHESKI, KEVIN E · 2012 to 2019
$12.0M
STRUCTURE OF A SMALL SPHERICAL VIRUSR37AI011219 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI ROSSMANN, MICHAEL G · 1986 to 2015
$6.6M
STRUCTURE OF A SMALL SPHERICAL VIRUSR01AI011219 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI KUHN, RICHARD J. · 1985 to 2020
$2.4M
NIAID NIH HHS R01 AI011219NIAID NIH HHS R37 AI011219NIGMS NIH HHS P41 GM103422
6 · The paper itself

Abstract

Although the nucleocytoplasmic large DNA viruses (NCLDVs) are one of the largest group of viruses that infect many eukaryotic hosts, the near-atomic resolution structures of these viruses have remained unknown. Here we describe a 3.5 Å resolution icosahedrally averaged capsid structure of Paramecium bursaria chlorella virus 1 (PBCV-1). This structure consists of 5040 copies of the major capsid protein, 60 copies of the penton protein and 1800 minor capsid proteins of which there are 13 different types. The minor capsid proteins form a hexagonal network below the outer capsid shell, stabilizing the capsid by binding neighboring capsomers together. The size of the viral capsid is determined by a tape-measure, minor capsid protein of which there are 60 copies in the virion. Homologs of the tape-measure protein and some of the other minor capsid proteins exist in other NCLDVs. Thus, a similar capsid assembly pathway might be used by other NCLDVs.

Indexed as

CapsidCapsid ProteinsDNA VirusesGiant VirusesModels, MolecularPhycodnaviridaeProtein Structure, QuaternarySequence Homology, Amino AcidViral ProteinsVirionVirus AssemblyCapsid ProteinsViral Proteins

Identifiers

PMID30674888
PMCPMC6344570
OpenAlexW2911660291

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.