Evidence map›Paper›PMID 30674554›Full record

ArticleThe Journal of biological chemistry2019

The phenylketonuria-associated substitution R68S converts phenylalanine hydroxylase to a constitutively active enzyme but reduces its stability.

Crystal A Khan, Steve P Meisburger, Nozomi Ando, Paul F Fitzpatrick

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. FeHeliyon · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Crystal A KhanFrom the Department of Biochemistry and Structural Biology, UT Health San Antonio, San Antonio, Texas 78229 and.
Steve P Meisburgerthe Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853.
Nozomi Andothe Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853.
Paul F FitzpatrickFrom the Department of Biochemistry and Structural Biology, UT Health San Antonio, San Antonio, Texas 78229 and fitzpatrickp@uthscsa.edu.ORCID 0000-0002-8486-2024
Cornell University · USThe University of Texas Health Science Center at San Antonio · US

Funding

Overall (pp. 40-62)P41GM103485 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2012 to 2018
$15.5M
Protein Allostery and Catalysis Beyond Bragg DiffractionR35GM124847 · NIGMS · PRINCETON UNIVERSITY · PI Nozomi Ando · 2017 to 2026
$4.1M
Regulation of Phenylalanine CatabolismR01GM098140 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI FITZPATRICK, PAUL F. · 2011 to 2014
$1.2M
Allosteric motions of B12 enzymesF32GM117757 · NIGMS · PRINCETON UNIVERSITY · PI MEISBURGER, STEPHEN PAUL · 2016 to 2017
$115k
Regulation of Phenylalanine HydroxylaseF31GM116452 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI OLIVAS, CRYSTAL · 2016 to 2017
$63k
NIGMS NIH HHS F31 GM116452NIGMS NIH HHS F32 GM117757NIGMS NIH HHS P41 GM103485NIGMS NIH HHS R01 GM098140NIGMS NIH HHS R35 GM124847
6 · The paper itself

Abstract

The naturally occurring R68S substitution of phenylalanine hydroxylase (PheH) causes phenylketonuria (PKU). However, the molecular basis for how the R68S variant leads to PKU remains unclear. Kinetic characterization of R68S PheH establishes that the enzyme is fully active in the absence of allosteric binding of phenylalanine, in contrast to the WT enzyme. Analytical ultracentrifugation establishes that the isolated regulatory domain of R68S PheH is predominantly monomeric in the absence of phenylalanine and dimerizes in its presence, similar to the regulatory domain of the WT enzyme. Fluorescence and small-angle X-ray scattering analyses establish that the overall conformation of the resting form of R68S PheH is different from that of the WT enzyme. The data are consistent with the substitution disrupting the interface between the catalytic and regulatory domains of the enzyme, shifting the equilibrium between the resting and activated forms ∼200-fold, so that the resting form of R68S PheH is ∼70% in the activated conformation. However, R68S PheH loses activity 2 orders of magnitude more rapidly than the WT enzyme at 37 °C and is significantly more sensitive to proteolysis. We propose that, even though this substitution converts the enzyme to a constitutively active enzyme, it results in PKU because of the decrease in protein stability.

Indexed as

Allosteric RegulationElectrophoresis, Polyacrylamide GelEnzyme StabilityKineticsMutationPhenylalanine HydroxylasePhenylketonuriasProtein ConformationScattering, Small AngleSpectrometry, FluorescenceUltracentrifugationX-Ray DiffractionPhenylalanine Hydroxylaseallosteric regulationallosteryanalytical ultracentrifugationenzyme kineticsenzyme stabilityhydroxylasephenylalanine hydroxylasephenylketonuriaprotein conformationprotein structuresmall-angle X-ray scattering (SAXS)

Identifiers

PMID30674554
PMCPMC6433070
OpenAlexW2912411743

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.