Evidence map›Paper›PMID 30674341›Full record

ArticleGenome medicine2019

Single-cell analysis reveals congruence between kidney organoids and human fetal kidney.

Alexander N Combes, Luke Zappia, Pei Xuan Er, Alicia Oshlack, Melissa H Little

Open access · goldAbstract read
In one paragraph

Article in Genome medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed
11.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed, 219 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Comparative analysis ofbioRxiv : the preprint server for biology · 2025
    Article
  20. Article

66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Alexander N CombesDepartment of Anatomy & Neuroscience, University of Melbourne, Melbourne, VIC, Australia. alexander.combes@unimelb.edu.au.
Luke ZappiaMurdoch Children's Research Institute, Melbourne, VIC, Australia.
Pei Xuan ErMurdoch Children's Research Institute, Melbourne, VIC, Australia.
Alicia OshlackMurdoch Children's Research Institute, Melbourne, VIC, Australia.
Melissa H LittleDepartment of Anatomy & Neuroscience, University of Melbourne, Melbourne, VIC, Australia. melissa.little@mcri.edu.au.ORCID 0000-0003-0380-2263
The University of Melbourne · AUMurdoch Children's Research Institute · AU

Funding

Generating kidney organoids and mature renal cell types via directed iPSC differentiationUH3DK107344 · NIDDK · MURDOCH CHILDREN'S RESEARCH INSTITUTE · PI LITTLE, MELISSA HELEN · 2017 to 2019
$1.0M
Generating kidney organoids and mature renal cell types via directed iPSC differentiationUH2DK107344 · NIDDK · MURDOCH CHILDREN'S RESEARCH INSTITUTE · PI LITTLE, MELISSA HELEN · 2015 to 2016
$691k
NIDDK NIH HHS DK107344NIDDK NIH HHS UH2 DK107344NIDDK NIH HHS UH3 DK107344
6 · The paper itself

Abstract

backgroundHuman kidney organoids hold promise for studying development, disease modelling and drug screening. However, the utility of stem cell-derived kidney tissues will depend on how faithfully these replicate normal fetal development at the level of cellular identity and complexity.

methodsHere, we present an integrated analysis of single cell datasets from human kidney organoids and human fetal kidney to assess similarities and differences between the component cell types.

resultsClusters in the combined dataset contained cells from both organoid and fetal kidney with transcriptional congruence for key stromal, endothelial and nephron cell type-specific markers. Organoid enriched neural, glial and muscle progenitor populations were also evident. Major transcriptional differences between organoid and human tissue were likely related to technical artefacts. Cell type-specific comparisons revealed differences in stromal, endothelial and nephron progenitor cell types including expression of WNT2B in the human fetal kidney stroma.

conclusionsThis study supports the fidelity of kidney organoids as models of the developing kidney and affirms their potential in disease modelling and drug screening.

Indexed as

Cell LineCell LineageGlycoproteinsHumansInduced Pluripotent Stem CellsKidneyOrganoidsSingle-Cell AnalysisWnt ProteinsGlycoproteinsWNT2B protein, humanWnt ProteinsHuman kidney organoidsInduced pluripotent cellsOrganoidsSingle-cell RNA sequencingStem cell-derived models

Identifiers

PMID30674341
PMCPMC6345028
OpenAlexW2916592801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.