Evidence map›Paper›PMID 30673751›Full record

ArticlePloS one2019

Blast resistance in Indian rice landraces: Genetic dissection by gene specific markers.

Manoj Kumar Yadav, S Aravindan, Umakanta Ngangkham, S Raghu, S R Prabhukarthikeyan, U Keerthana, B C Marndi, Totan Adak, Susmita Munda, Rupesh Deshmukh and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Current status of molecular rice breeding for durable and broad-spectrum resistance to major diseases and insect pests.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Review
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  10. Linkage of SSR markers with rice blast resistance and development of partial resistant advanced lines of rice (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Manoj Kumar YadavICAR-National Rice Research Institute, Odisha, India.ORCID 0000-0002-5771-0770
S AravindanICAR-National Rice Research Institute, Odisha, India.
Umakanta NgangkhamICAR-National Rice Research Institute, Odisha, India.
S RaghuICAR-National Rice Research Institute, Odisha, India.
S R PrabhukarthikeyanICAR-National Rice Research Institute, Odisha, India.
U KeerthanaICAR-National Rice Research Institute, Odisha, India.
B C MarndiICAR-National Rice Research Institute, Odisha, India.
Totan AdakICAR-National Rice Research Institute, Odisha, India.
Susmita MundaICAR-National Rice Research Institute, Odisha, India.
Rupesh DeshmukhNational Agri-Food Biotechnology Institute (NABI), Mohali Punjab, India.
D PrameshRice Pathology Laboratory, AICRIP, Gangavathi, University of Agricultural Sciences, Raichur, India.ORCID 0000-0002-5229-443X
Sanghamitra SamantarayICAR-National Rice Research Institute, Odisha, India.
P C RathICAR-National Rice Research Institute, Odisha, India.
Central Rice Research Institute · INNational Agri-Food Biotechnology Institute · INUniversity of Agricultural Sciences Raichur · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding of genetic diversity is important to explore existing gene in any crop breeding program. Most of the diversity preserved in the landraces which are well-known reservoirs of important traits for biotic and abiotic stresses. In the present study, the genetic diversity at twenty-four most significant blast resistance gene loci using twenty-eight gene specific markers were investigated in landraces originated from nine diverse rice ecologies of India. Based on phenotypic evaluation, landraces were classified into three distinct groups: highly resistant (21), moderately resistant (70) and susceptible (70). The landraces harbour a range of five to nineteen genes representing blast resistance allele with the frequency varied from 4.96% to 100%. The cluster analysis grouped entire 161 landraces into two major groups. Population structure along with other parameters was also analyzed to understand the evolution of blast resistance gene in rice. The population structure analysis and principal coordinate analysis classified the landraces into two sub-populations. Analysis of molecular variance showed maximum (93%) diversity within the population and least (7%) between populations. Five markers viz; K3957, Pikh, Pi2-i, RM212and RM302 were strongly associated with blast disease with the phenotypic variance of 1.4% to 7.6%. These resistant landraces will serve as a valuable genetic resource for future genomic studies, host-pathogen interaction, identification of novel R genes and rice improvement strategies.

Indexed as

Genetic VariationDisease ResistanceGenetic MarkersIndiaOryzaPlant DiseasesGenetic Markers

Identifiers

PMID30673751
PMCPMC6343911
OpenAlexW2914434089

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.