Evidence map›Paper›PMID 30672687›Full record

ArticleAnalytical chemistry2019

Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry.

Devin K Schweppe, Satendra Prasad, Michael W Belford, José Navarrete-Perea, Derek J Bailey, Romain Huguet, Mark P Jedrychowski, Ramin Rad, Graeme McAlister, Susan E Abbatiello and 5 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 137 papers.

0numbers the graph read from it
0cells of the map it votes in
137citing papers in PubMed
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

137 citing papers in PubMed, 237 citations in OpenAlex.

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77 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Devin K SchweppeDepartment of Cell Biology , Harvard Medical School , Cambridge , Massachusetts 02115 , United States.ORCID 0000-0002-3241-6276
Satendra PrasadThermo Scientific LSMS, San Jose , California 95134 , United States.
Michael W BelfordThermo Scientific LSMS, San Jose , California 95134 , United States.
José Navarrete-PereaDepartment of Cell Biology , Harvard Medical School , Cambridge , Massachusetts 02115 , United States.ORCID 0000-0001-6265-6214
Derek J BaileyThermo Scientific LSMS, San Jose , California 95134 , United States.
Romain HuguetThermo Scientific LSMS, San Jose , California 95134 , United States.
Mark P JedrychowskiDepartment of Cell Biology , Harvard Medical School , Cambridge , Massachusetts 02115 , United States.
Ramin RadDepartment of Cell Biology , Harvard Medical School , Cambridge , Massachusetts 02115 , United States.
Graeme McAlisterThermo Scientific LSMS, San Jose , California 95134 , United States.
Susan E AbbatielloThermo Scientific LSMS, San Jose , California 95134 , United States.
Eloy R WoultersThermo Scientific LSMS, San Jose , California 95134 , United States.
Vlad ZabrouskovThermo Scientific LSMS, San Jose , California 95134 , United States.
Jean-Jacques DunyachThermo Scientific LSMS, San Jose , California 95134 , United States.
João A PauloDepartment of Cell Biology , Harvard Medical School , Cambridge , Massachusetts 02115 , United States.
Steven P GygiDepartment of Cell Biology , Harvard Medical School , Cambridge , Massachusetts 02115 , United States.
Thermo Fisher Scientific (United States) · USHarvard University · US

Funding

New Sample Multiplexing Technologies to Identify Chemical Probes and Illuminate Ubiquitin BiologyR01GM067945 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI GYGI, STEVEN P · 2003 to 2024
$10.5M
Systematic Exploration of the Human Interactome IVU24HG006673 · NHGRI · HARVARD MEDICAL SCHOOL · PI GYGI, STEVEN P, HARPER, JEFFREY W · 2018 to 2025
$6.0M
Resolving the role of nicotine-mediated phosphorylation on pancreatic fibrosisK01DK098285 · NIDDK · HARVARD MEDICAL SCHOOL · PI PAULO, JOAO A · 2013 to 2017
$638k
NHGRI NIH HHS U24 HG006673NIDDK NIH HHS K01 DK098285NIGMS NIH HHS R01 GM067945
6 · The paper itself

Abstract

Multiplexed, isobaric tagging methods are powerful techniques to increase throughput, precision, and accuracy in quantitative proteomics. The dynamic range and accuracy of quantitation, however, can be limited by coisolation of tag-containing peptides that release reporter ions and conflate quantitative measurements across precursors. Methods to alleviate these effects often lead to the loss of protein and peptide identifications through online or offline filtering of interference containing spectra. To alleviate this effect, high-Field Asymmetric-waveform Ion Mobility Spectroscopy (FAIMS) has been proposed as a method to reduce precursor coisolation and improve the accuracy and dynamic range of multiplex quantitation. Here we tested the use of FAIMS to improve quantitative accuracy using previously established TMT-based interference standards (triple-knockout [TKO] and Human-Yeast Proteomics Resource [HYPER]). We observed that FAIMS robustly improved the quantitative accuracy of both high-resolution MS

Indexed as

HCT116 CellsHumansMass SpectrometryNeoplasm ProteinsPeptidesProteomeProteomicsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsNeoplasm ProteinsPeptidesProteomeSaccharomyces cerevisiae Proteins

Identifiers

PMID30672687
PMCPMC6993951
OpenAlexW2912956724

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.