Evidence map›Paper›PMID 30672374›Full record

ArticleRNA biology2019

Mutagenesis of Snu114 domain IV identifies a developmental role in meiotic splicing.

Amit Gautam, Jean D Beggs

Open access · hybridAbstract read
In one paragraph

Article in RNA biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Amit Gautama Wellcome Centre for Cell Biology , University of Edinburgh , Edinburgh , UK.
Jean D Beggsa Wellcome Centre for Cell Biology , University of Edinburgh , Edinburgh , UK.ORCID 0000-0002-8179-6519
Wellcome Centre for Cell Biology · GB

Funding

Wellcome Trust 092076Wellcome Trust 104648
6 · The paper itself

Abstract

Snu114, a component of the U5 snRNP, plays a key role in activation of the spliceosome. It controls the action of Brr2, an RNA-stimulated ATPase/RNA helicase that disrupts U4/U6 snRNA base-pairing prior to formation of the spliceosome's catalytic centre. Snu114 has a highly conserved domain structure that resembles that of the GTPase EF-2/EF-G in the ribosome. It has been suggested that the regulatory function of Snu114 in activation of the spliceosome is mediated by its C-terminal region, however, there has been only limited characterisation of the interactions of the C-terminal domains. We show a direct interaction between protein phosphatase PP1 and Snu114 domain 'IVa' and identify sequence 'YGVQYK' as a PP1 binding motif. Interestingly, this motif is also required for Cwc21 binding. We provide evidence for mutually exclusive interaction of Cwc21 and PP1 with Snu114 and show that the affinity of Cwc21 and PP1 for Snu114 is influenced by the different nucleotide-bound states of Snu114. Moreover, we identify a novel mutation in domain IVa that, while not affecting vegetative growth of yeast cells, causes a defect in splicing transcripts of the meiotic genes, SPO22, AMA1 and MER2, thereby inhibiting an early stage of meiosis.

Indexed as

Gene Expression RegulationMutagenesisRNA SplicingAmino Acid MotifsAmino Acid SequenceBinding SitesCarrier ProteinsCell CycleEpistasis, GeneticGuanosine DiphosphateGuanosine TriphosphateMiosisMutationProtein BindingProtein Interaction Domains and MotifsRibonucleoprotein, U5 Small NuclearCarrier ProteinsGuanosine DiphosphateGuanosine TriphosphateRibonucleoprotein, U5 Small NuclearRNA-Binding ProteinsSnu114/regulated splicing/Cwc21/meiosis/PP1/U5 snRNP

Identifiers

PMID30672374
PMCPMC6380292
OpenAlexW2913846565

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.