Evidence map›Paper›PMID 30670878›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

Untargeted metabolomic profiling reveals multiple pathway perturbations and new clinical biomarkers in urea cycle disorders.

Lindsay C Burrage, Lillian Thistlethwaite, Bridget M Stroup, Qin Sun, Marcus J Miller, Sandesh C S Nagamani, William Craigen, Fernando Scaglia, V Reid Sutton, Brett Graham and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 66 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 3 countries.

Lindsay C BurrageDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA. burrage@bcm.edu.
Lillian ThistlethwaiteProgram in Quantitative and Computational Biosciences, Baylor College of Medicine, Houston, TX, USA.
Bridget M StroupDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Qin SunDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Marcus J MillerDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Sandesh C S NagamaniDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
William CraigenDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Fernando ScagliaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
V Reid SuttonDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Brett GrahamDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Adam D KennedyMetabolon, Inc., Durham, NC, USA.
Members of the UCDC,
Aleksandar MilosavljevicDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Brendan H LeeDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Sarah H ElseaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA. elsea@bcm.edu.
Baylor College of Medicine · USMetabolon (United States) · US

Funding

The Impact of COVID-19 on People Living with Rare Diseases and Their FamiliesU2CTR002818 · NCATS · CINCINNATI CHILDRENS HOSP MED CTR · PI Maurizio Macaluso · 2019 to 2026
$51.2M
UNDERSTANDING FXTAS AMONG MALES WITH THE FMR1 PREMUTATIONP30HD024064 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI TOLIAS, KIMBERLY R · 1988 to 2013
$29.4M
Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Geoffrey A Preidis · 2001 to 2026
$28.3M
Training (Career Development) ComponentU54HD061221 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI AH MEW, NICHOLAS, GROPMAN, ANDREA LYNNE · 2009 to 2023
$20.8M
TRAINING PROGRAM IN COMPUTATIONAL BIOLOGY AND MEDICINET15LM007093 · NLM · RICE UNIVERSITY · PI Lydia E. Kavraki · 1992 to 2026
$20.8M
Research Training in Pediatrics GastroenterolgyT32DK007664 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI DOUGLAS G BURRIN · 1991 to 2026
$8.4M
Role of Nitric Oxide in Pathogenesis of Alzheimer's DiseaseR01DK102641 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI LEE, BRENDAN · 2014 to 2018
$2.8M
Disordered Energy Metabolism in Argininosuccinate Lyase DeficiencyK08DK106453 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI BURRAGE, LINDSAY C · 2015 to 2018
$622k
NCATS NIH HHS U2C TR002818NICHD NIH HHS P30 HD024064NICHD NIH HHS U54 HD061221NIDDK NIH HHS K08 DK106453NIDDK NIH HHS P30 DK056338NIDDK NIH HHS R01 DK102641NIDDK NIH HHS T32 DK007664NLM NIH HHS T15 LM007093
6 · The paper itself

Abstract

purposeUntargeted metabolomic analysis is increasingly being used in the screening and management of individuals with inborn errors of metabolism (IEM). We aimed to test whether untargeted metabolomic analysis in plasma might be useful for monitoring the disease course and management of urea cycle disorders (UCDs).

methodsUntargeted mass spectrometry-based metabolomic analysis was used to generate z-scores for more than 900 metabolites in plasma from 48 individuals with various UCDs. Pathway analysis was used to identify common pathways that were perturbed in each UCD.

resultsOur metabolomic analysis in plasma identified multiple potentially neurotoxic metabolites of arginine in arginase deficiency and, thus, may have utility in monitoring the efficacy of treatment in arginase deficiency. In addition, we were also able to detect multiple biochemical perturbations in all UCDs that likely reflect clinical management, including metabolite alterations secondary to dietary and medication management.

conclusionIn addition to utility in screening for IEM, our results suggest that untargeted metabolomic analysis in plasma may be beneficial for monitoring efficacy of clinical management and off-target effects of medications in UCDs and potentially other IEM.

Indexed as

MetabolomicsAdolescentAdultBiomarkersChildChild, PreschoolFemaleHumansMaleMass SpectrometryMetabolic Networks and PathwaysMetabolism, Inborn ErrorsUreaUrea Cycle Disorders, InbornYoung AdultBiomarkersUreaarginase deficiencybranched-chain amino acidsguanidino compoundsmetabolomicsurea cycle disorder

Identifiers

PMID30670878
PMCPMC6650380
OpenAlexW2912592175

What OpenQuestion holds

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LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.