Evidence map›Paper›PMID 30670608›Full record

ArticleG3 (Bethesda, Md.)2019

Auxin-Inducible Depletion of the Essentialome Suggests Inhibition of TORC1 by Auxins and Inhibition of Vrg4 by SDZ 90-215, a Natural Antifungal Cyclopeptide.

Nathan A Snyder, Adam Kim, Louis Kester, Andrew N Gale, Christian Studer, Dominic Hoepfner, Silvio Roggo, Stephen B Helliwell, Kyle W Cunningham

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Sugar signals pedal the cell cycle!Frontiers in plant science · 2024
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Nathan A SnyderDepartment of Biology, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218.
Adam KimDepartment of Biology, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218.ORCID 0000-0002-3186-3912
Louis KesterDepartment of Biology, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218.ORCID 0000-0002-1715-4554
Andrew N GaleDepartment of Biology, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218.ORCID 0000-0002-1885-216X
Christian StuderNovartis Institutes for BioMedical Research, Novartis Campus, CH-4056 Basel, Switzerland.
Dominic HoepfnerNovartis Institutes for BioMedical Research, Novartis Campus, CH-4056 Basel, Switzerland.
Silvio RoggoNovartis Institutes for BioMedical Research, Novartis Campus, CH-4056 Basel, Switzerland.
Stephen B HelliwellNovartis Institutes for BioMedical Research, Novartis Campus, CH-4056 Basel, Switzerland.ORCID 0000-0001-6019-9574
Kyle W CunninghamDepartment of Biology, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218 kwc@jhu.edu.
Johns Hopkins University · USNovartis Institutes for BioMedical ResearchNovartis (Switzerland) · CH

Funding

CELLULAR AND MOLECULAR BIOLOGYT32GM007231 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VAN DOREN, MARK B · 1985 to 2020
$18.4M
Functional genomics using auxin-inducible deletion analyses (AIDA)R21AI115016 · NIAID · JOHNS HOPKINS UNIVERSITY · PI CUNNINGHAM, KYLE W · 2015 to 2016
$434k
Identifying and characterizing a H+/Ca2+ exchanger that supports lactationR21HD080102 · NICHD · JOHNS HOPKINS UNIVERSITY · PI CUNNINGHAM, KYLE W · 2015 to 2016
$429k
NIAID NIH HHS R21 AI115016NICHD NIH HHS R21 HD080102NIGMS NIH HHS T32 GM007231
6 · The paper itself

Abstract

Gene knockout and knockdown strategies have been immensely successful probes of gene function, but small molecule inhibitors (SMIs) of gene products allow much greater time resolution and are particularly useful when the targets are essential for cell replication or survival. SMIs also serve as lead compounds for drug discovery. However, discovery of selective SMIs is costly and inefficient. The action of SMIs can be modeled simply by tagging gene products with an auxin-inducible degron (AID) that triggers rapid ubiquitylation and proteasomal degradation of the tagged protein upon exposure of live cells to auxin. To determine if this approach is broadly effective, we AID-tagged over 750 essential proteins in

Indexed as

Antifungal AgentsGenetics, MicrobialIndoleacetic AcidsMembrane Transport ProteinsNaphthaleneacetic AcidsPeptides, CyclicSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factors1-naphthaleneacetic acidAntifungal AgentsIndoleacetic AcidsMembrane Transport ProteinsNaphthaleneacetic AcidsPeptides, CyclicSaccharomyces cerevisiae ProteinsSDZ 90-215TORC1 protein complex, S cerevisiaeTranscription FactorsVRG4 protein, S cerevisiaeauxinauxin inducible degronfunctional genomicsglycosylationGolgirapamycin

Identifiers

PMID30670608
PMCPMC6404609
OpenAlexW2913030926

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.