ArticleBMC genomics2019
Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand.
Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.
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Who cites it
41 citing papers in PubMed, 84 citations in OpenAlex.
- Genome-Wide Meta-QTL Analysis and InDel Markers for Salt Tolerance in Rice: Bridging the Gap from Genomics to Breeding.Rice (New York, N.Y.) · 2026Article
- Transcriptomic analysis of Thai rice varieties at the reproductive stage uncovers potential genetic determinants of salt tolerance.BMC plant biology · 2025Article
- FScientific reports · 2025Article
- Comprehensive evaluation of compound saline-alkali tolerance and gene mining by GWAS in Vicia faba L.BMC plant biology · 2025Article
- Leaf Na+ effects and multi-trait GWAS point to salt exclusion as the key mechanism for reproductive stage salinity tolerance in rice.Annals of botany · 2025Article
- Effects of Salt Stress at the Booting Stage of Grain Development on Physiological Responses, Starch Properties, and Starch-Related Gene Expression in Rice (Plants (Basel, Switzerland) · 2025Article
- Identification of a key locus, qRL8.1, associated with root length traits during seed germination under salt stress via a genome-wide association study in rice.BMC plant biology · 2025Article
- Uncovering genetic determinants of antioxidant properties in Thai landrace rice through genome-wide association analysis.Scientific reports · 2025Article
- Roles of maizeFrontiers in plant science · 2025Article
- Understanding of Plant Salt Tolerance Mechanisms and Application to Molecular Breeding.International journal of molecular sciences · 2024Review
- Article
- Uncovering Novel QTLs and Candidate Genes for Salt Tolerance at the Bud Burst Stage in Rice through Genome-Wide Association Study.Plants (Basel, Switzerland) · 2024Article
- Genomic prediction and QTL analysis for grain Zn content and yield inJournal of plant biochemistry and biotechnology · 2024Article
- QTL-Seq identified a genomic region on chromosome 1 for soil-salinity tolerance in FFrontiers in plant science · 2024Article
- Article
- Progress and prospects in harnessing wild relatives for genetic enhancement of salt tolerance in rice.Frontiers in plant science · 2023Review
- Molecular dissection of connected rice populations revealed important genomic regions for agronomic and biofortification traits.Frontiers in plant science · 2023Article
- Multi-Omics and Integrative Approach towards Understanding Salinity Tolerance in Rice: A Review.Biology · 2022Review
- Integrated Multi-Omics Perspective to Strengthen the Understanding of Salt Tolerance in Rice.International journal of molecular sciences · 2022Review
- Salt stress responses and SNP-based phylogenetic analysis of Thai rice cultivars.The plant genome · 2022Article
Corrections and comments
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Authors and funding
8 authors at 3 institutions in 2 countries.
Funding
Abstract
backgroundSalt stress, a major plant environmental stress, is a critical constraint for rice productivity. Dissecting the genetic loci controlling salt tolerance in rice for improving productivity, especially at the flowering stage, remains challenging. Here, we conducted a genome-wide association study (GWAS) of salt tolerance based on exome sequencing of the Thai rice accessions.
resultsPhotosynthetic parameters and cell membrane stability under salt stress at the flowering stage; and yield-related traits of 104 Thai rice (Oryza sativa L.) accessions belonging to the indica subspecies were evaluated. The rice accessions were subjected to exome sequencing, resulting in 112,565 single nucleotide polymorphisms (SNPs) called with a minor allele frequency of at least 5%. LD decay analysis of the panel indicates that the average LD for SNPs at 20 kb distance from each other was 0.34 (r
conclusionsInsight into the contribution of potential genes controlling salt tolerance from this GWAS provides further understanding of salt tolerance mechanisms of rice at the flowering stage, which can help improve yield productivity under salinity via gene cloning and genomic selection.
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