Evidence map›Paper›PMID 30669653›Full record

ArticleInternational journal of molecular sciences2019

Comparative Phosphoproteomic Analysis of Barley Embryos with Different Dormancy during Imbibition.

Shinnosuke Ishikawa, José Barrero, Fuminori Takahashi, Scott Peck, Frank Gubler, Kazuo Shinozaki, Taishi Umezawa

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Dynamics of Protein Phosphorylation duringInternational journal of molecular sciences · 2022
    Article
  2. A Phosphoproteomics Study of the SoybeanFrontiers in plant science · 2022
    Article
  3. Review
  4. Large-Scale Phosphoproteomic Study ofInternational journal of molecular sciences · 2020
    Article
  5. Article
  6. Plant Proteomic Research 2.0: Trends and Perspectives.International journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Shinnosuke IshikawaGraduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Koganei, Tokyo 184-8588, Japan. s177676w@st.go.tuat.ac.jp.
José BarreroCSIRO Agriculture and Food, Canberra ACT 2601, Australia. jose.barrero@csiro.au.
Fuminori TakahashiGene Discovery Research Group, RIKEN Center for Sustainable Resource Science, Tsukuba, Ibaraki 305-0074, Japan. fuminori.takahashi@riken.jp.ORCID 0000-0001-8817-8652
Scott PeckDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA. pecks@missouri.edu.
Frank GublerCSIRO Agriculture and Food, Canberra ACT 2601, Australia. frank.gubler@csiro.au.
Kazuo ShinozakiGene Discovery Research Group, RIKEN Center for Sustainable Resource Science, Tsukuba, Ibaraki 305-0074, Japan. kazuo.shinozaki@riken.jp.
Taishi UmezawaGraduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Koganei, Tokyo 184-8588, Japan. taishi@cc.tuat.ac.jp.ORCID 0000-0003-3750-0503
Commonwealth Scientific and Industrial Research Organisation · AURIKEN Center for Sustainable Resource Science · JPJapan Science and Technology Agency · JPTokyo University of Agriculture and Technology · JPUniversity of Missouri · US

Funding

Japan Science and Technology Corporation JP13413773Ministry of Education, Culture, Sports, Science and Technology JP15H04383Ministry of Education, Culture, Sports, Science and Technology JP16KK0160
6 · The paper itself

Abstract

Dormancy is the mechanism that allows seeds to become temporally quiescent in order to select the right time and place to germinate. Like in other species, in barley, grain dormancy is gradually reduced during after-ripening. Phosphosignaling networks in barley grains were investigated by a large-scale analysis of phosphoproteins to examine potential changes in response pathways to after-ripening. We used freshly harvested (FH) and after-ripened (AR) barley grains which showed different dormancy levels. The LC-MS/MS analysis identified 2346 phosphopeptides in barley embryos, with 269 and 97 of them being up- or downregulated during imbibition, respectively. A number of phosphopeptides were differentially regulated between FH and AR samples, suggesting that phosphoproteomic profiles were quite different between FH and AR grains. Motif analysis suggested multiple protein kinases including SnRK2 and MAPK could be involved in such a difference between FH and AR samples. Taken together, our results revealed phosphosignaling pathways in barley grains during the water imbibition process.

Indexed as

Plant DormancyProteomeProteomicsAbscisic AcidGerminationHordeumPhosphopeptidesPhosphoproteinsPlant ProteinsSeedsAbscisic AcidPhosphopeptidesPhosphoproteinsPlant ProteinsProteomeafter-ripeningbarleygerminationimbibitionphosphoproteomeseed dormancy

Identifiers

PMID30669653
PMCPMC6359383
OpenAlexW2908917292

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.