Evidence map›Paper›PMID 30669351›Full record

ArticleGenes2019

Genetics and Genomic Regions Affecting Response to Newcastle Disease Virus Infection under Heat Stress in Layer Chickens.

Perot Saelao, Ying Wang, Ganrea Chanthavixay, Rodrigo A Gallardo, Anna Wolc, Jack C M Dekkers, Susan J Lamont, Terra Kelly, Huaijun Zhou

Open access · goldAbstract read
In one paragraph

Article in Genes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Fourth Report on Chicken Genes and Chromosomes 2022.Cytogenetic and genome research · 2022
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Perot SaelaoIntegrative Genetics and Genomics Graduate Group, University of California, Davis, CA 95616, USA. psaelao@ucdavis.edu.
Ying WangGenomics to Improve Poultry Innovation Lab, University of California, Davis, CA 95616, USA. ucywang@ucdavis.edu.
Ganrea ChanthavixayIntegrative Genetics and Genomics Graduate Group, University of California, Davis, CA 95616, USA. kchantha@ucdavis.edu.
Rodrigo A GallardoSchool of Veterinary Medicine, University of California, Davis, CA 95616, USA. ragallardo@ucdavis.edu.ORCID 0000-0003-4727-8256
Anna WolcDepartment of Animal Science, Iowa State University, Ames, IA 50011, USA. awolc@iastate.edu.ORCID 0000-0003-1190-5713
Jack C M DekkersDepartment of Animal Science, Iowa State University, Ames, IA 50011, USA. jdekkers@iastate.edu.
Susan J LamontDepartment of Animal Science, Iowa State University, Ames, IA 50011, USA. sjlamont@iastate.edu.
Terra KellyGenomics to Improve Poultry Innovation Lab, University of California, Davis, CA 95616, USA. trkelly@ucdavis.edu.
Huaijun ZhouGenomics to Improve Poultry Innovation Lab, University of California, Davis, CA 95616, USA. hzhou@ucdavis.edu.ORCID 0000-0001-6023-9521
University of California, Davis · USIowa State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Newcastle disease virus (NDV) is a highly contagious avian pathogen that poses a tremendous threat to poultry producers in endemic zones due to its epidemic potential. To investigate host genetic resistance to NDV while under the effects of heat stress, a genome-wide association study (GWAS) was performed on Hy-Line Brown layer chickens that were challenged with NDV while under high ambient temperature to identify regions associated with host viral titer, circulating anti-NDV antibody titer, and body weight change. A single nucleotide polymorphism (SNP) on chromosome 1 was associated with viral titer at two days post-infection (dpi), while 30 SNPs spanning a quantitative trait loci (QTL) on chromosome 24 were associated with viral titer at 6 dpi. Immune related genes, such as CAMK1d and CCDC3 on chromosome 1, associated with viral titer at 2 dpi, and TIRAP, ETS1, and KIRREL3, associated with viral titer at 6 dpi, were located in two QTL regions for viral titer that were identified in this study. This study identified genomic regions and candidate genes that are associated with response to NDV during heat stress in Hy-Line Brown layer chickens. Regions identified for viral titer on chromosome 1 and 24, at 2 and 6 dpi, respectively, included several genes that have key roles in regulating the immune response.

Indexed as

Heat-Shock ResponsePolymorphism, Single NucleotideQuantitative Trait LociAnimalsAvian ProteinsCalcium-Calmodulin-Dependent Protein Kinase Type 1ChickensNewcastle DiseaseProto-Oncogene Protein c-ets-1Receptors, Interleukin-1Avian ProteinsCalcium-Calmodulin-Dependent Protein Kinase Type 1Proto-Oncogene Protein c-ets-1Receptors, Interleukin-1chickenGWASheat stressNDVQTL

Identifiers

PMID30669351
PMCPMC6356198
OpenAlexW2910434430

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.