Evidence map›Paper›PMID 30668735›Full record

ArticleThe Journal of infectious diseases2019

Genomic Analysis of Plasmodium vivax in Southern Ethiopia Reveals Selective Pressures in Multiple Parasite Mechanisms.

Sarah Auburn, Sisay Getachew, Richard D Pearson, Roberto Amato, Olivo Miotto, Hidayat Trimarsanto, Sha Joe Zhu, Angela Rumaseb, Jutta Marfurt, Rintis Noviyanti and 13 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 1 pooled it
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 1 synthesis or guideline pooled it, 72 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. High prevalence of mixedmedRxiv : the preprint server for health sciences · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. No Association between the Plasmodium vivaxAntimicrobial agents and chemotherapy · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 11 institutions in 6 countries.

Sarah AuburnGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Sisay GetachewCollege of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia.
Richard D PearsonWellcome Sanger Institute, Hinxton, Cambridge.
Roberto AmatoWellcome Sanger Institute, Hinxton, Cambridge.
Olivo MiottoWellcome Sanger Institute, Hinxton, Cambridge.
Hidayat TrimarsantoEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Sha Joe ZhuBig Data Institute, Li Ka Shing Centre for Health Information and Discovery, Oxford, United Kingdom.
Angela RumasebGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Jutta MarfurtGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Rintis NoviyantiEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Matthew J GriggGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Bridget BarberGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Timothy WilliamInfectious Diseases Society, Sabah-Menzies School of Health Research Clinical Research Unit, Sabah, Malaysia.
Sonia Morgado GoncalvesWellcome Sanger Institute, Hinxton, Cambridge.
Eleanor DruryWellcome Sanger Institute, Hinxton, Cambridge.
Kanlaya SriprawatShoklo Malaria Research Unit, Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Mae Sot, Thailand.
Nicholas M AnsteyGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Francois NostenCentre for Tropical Medicine and Global Health, Nuffield Department of Clinical Medicine, University of Oxford, United Kingdom.
Beyene PetrosCollege of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia.
Abraham AseffaArmauer Hansen Research Institute, Addis Ababa, Ethiopia.
Gil McVeanBig Data Institute, Li Ka Shing Centre for Health Information and Discovery, Oxford, United Kingdom.
Dominic P KwiatkowskiWellcome Sanger Institute, Hinxton, Cambridge.
Ric N PriceGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Charles Darwin University · AUWellcome Sanger Institute · GBHealth Data Research UK · GBAddis Ababa University · ETEijkman Institute for Molecular Biology · IDMenzies School of Health Research · AUShoklo Malaria Research Unit · THArmauer Hansen Research Institute · ETMahidol Oxford Tropical Medicine Research Unit · THQueen Elizabeth Hospital · MYUniversity of Oxford · GB

Funding

Medical Research Council MR/M006212/1Wellcome Trust 100956Wellcome Trust 200909Wellcome Trust 200909/Z/16/ZWellcome Trust 204911Wellcome Trust 206194
6 · The paper itself

Abstract

The Horn of Africa harbors the largest reservoir of Plasmodium vivax in the continent. Most of sub-Saharan Africa has remained relatively vivax-free due to a high prevalence of the human Duffy-negative trait, but the emergence of strains able to invade Duffy-negative reticulocytes poses a major public health threat. We undertook the first population genomic investigation of P. vivax from the region, comparing the genomes of 24 Ethiopian isolates against data from Southeast Asia to identify important local adaptions. The prevalence of the Duffy binding protein amplification in Ethiopia was 79%, potentially reflecting adaptation to Duffy negativity. There was also evidence of selection in a region upstream of the chloroquine resistance transporter, a putative chloroquine-resistance determinant. Strong signals of selection were observed in genes involved in immune evasion and regulation of gene expression, highlighting the need for a multifaceted intervention approach to combat P. vivax in the region.

Indexed as

GenotypeSelection, GeneticAdaptation, BiologicalAdolescentAnimalsChildChild, PreschoolEthiopiaFemaleHumansInfantInfant, NewbornMalaria, VivaxMalePlasmodium vivaxPrevalenceDuffyEthiopiagenomicsmalariaPlasmodiumvivax

Identifiers

PMID30668735
PMCPMC6804337
OpenAlexW2913803367

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.