Evidence map›Paper›PMID 30668712›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2019

Spell checker for consumer language (CSpell).

Chris J Lu, Alan R Aronson, Sonya E Shooshan, Dina Demner-Fushman

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Automatic classification of scanned electronic health record documents.International journal of medical informatics · 2020
    Article
  5. The Unified Medical Language System SPECIALIST Lexicon and Lexical Tools: Development and applications.Journal of the American Medical Informatics Association : JAMIA · 2020
    Article
  6. Article
  7. The journey to transparency, reproducibility, and replicability.Journal of the American Medical Informatics Association : JAMIA · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Chris J LuLister Hill National Center for Biomedical Communications National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
Alan R AronsonLister Hill National Center for Biomedical Communications National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
Sonya E ShooshanLister Hill National Center for Biomedical Communications National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
Dina Demner-FushmanLister Hill National Center for Biomedical Communications National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objective: Automated understanding of consumer health inquiries might be hindered by misspellings. To detect and correct various types of spelling errors in consumer health questions, we developed a distributable spell-checking tool, CSpell, that handles nonword errors, real-word errors, word boundary infractions, punctuation errors, and combinations of the above. Methods: We developed a novel approach of using dual embedding within Word2vec for context-dependent corrections. This technique was used in combination with dictionary-based corrections in a 2-stage ranking system. We also developed various splitters and handlers to correct word boundary infractions. All correction approaches are integrated to handle errors in consumer health questions. Results: Our approach achieves an F1 score of 80.93% and 69.17% for spelling error detection and correction, respectively. Discussion: The dual-embedding model shows a significant improvement (9.13%) in F1 score compared with the general practice of using cosine similarity with word vectors in Word2vec for context ranking. Our 2-stage ranking system shows a 4.94% improvement in F1 score compared with the best 1-stage ranking system. Conclusion: CSpell improves over the state of the art and provides near real-time automatic misspelling detection and correction in consumer health questions. The software and the CSpell test set are available at https://umlslex.nlm.nih.gov/cSpell.

Indexed as

AlgorithmsConsumer Health InformationInformation Seeking BehaviorLanguageNatural Language ProcessingConsumer Health InformaticsHumans

Identifiers

PMID30668712
PMCPMC6351975

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.