ArticleGenome biology and evolution2019
A High-quality Draft Genome Assembly of Sinella curviseta: A Soil Model Organism (Collembola).
Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed, 22 citations in OpenAlex.
- Haplotype-resolved genome sequences of a springtail species, Folsomia candida (Collembola: Isotomidae).Scientific data · 2026Article
- De novo genome assembly of the endemic Italian springtail Orchesella dallaii (Collembola: Orchesellidae).G3 (Bethesda, Md.) · 2025Article
- A Draft Genome Assembly of the Antarctic Springtail Cryptopygus antarcticus and Diversity of Glycoside Hydrolase Genes.Genome biology and evolution · 2025Article
- The effect of terrain on the fine-scale genetic diversity of sub-Antarctic Collembola: A landscape genetics approach.Ecology and evolution · 2024Article
- Chromosome-Level Genome Assembly ofInsects · 2023Article
- Article
- High-quality genomes reveal significant genetic divergence and cryptic speciation in the model organism Folsomia candida (collembola).Molecular ecology resources · 2023Article
- Chromosomal-Level Genome Assembly of the Springtail Tomocerus qinae (Collembola: Tomoceridae).Genome biology and evolution · 2022Article
- Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola).GigaScience · 2021Article
- The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect Innovations.Genome biology and evolution · 2020Article
- Phylomitogenomic analyses on collembolan higher taxa with enhanced taxon sampling and discussion on method selection.PloS one · 2020Article
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Authors and funding
6 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sinella curviseta, among the most widespread springtails (Collembola) in Northern Hemisphere, has often been treated as a model organism in soil ecology and environmental toxicology. However, little information on its genetic knowledge severely hinders our understanding of its adaptations to the soil habitat. We present the largest genome assembly within Collembola using ∼44.86 Gb (118X) of single-molecule real-time Pacific Bioscience Sequel sequencing. The final assembly of 599 scaffolds was ∼381.46 Mb with a N50 length of 3.28 Mb, which captured 95.3% complete and 1.5% partial arthropod Benchmarking Universal Single-Copy Orthologs (n = 1066). Transcripts and circularized mitochondrial genome were also assembled. We predicted 23,943 protein-coding genes, of which 83.88% were supported by transcriptome-based evidence and 82.49% matched protein records in UniProt. In addition, we also identified 222,501 repeats and 881 noncoding RNAs. Phylogenetic reconstructions for Collembola support Tomoceridae sistered to the remaining Entomobryomorpha with the position of Symphypleona not fully resolved. Gene family evolution analyses identified 9,898 gene families, of which 156 experienced significant expansions or contractions. Our high-quality reference genome of S. curviseta provides the genetic basis for future investigations in evolutionary biology, soil ecology, and ecotoxicology.
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