Evidence map›Paper›PMID 30667224›Full record

ArticleJournal of proteome research2019

P-Mart: Interactive Analysis of Ion Abundance Global Proteomics Data.

Lisa M Bramer, Kelly G Stratton, Amanda M White, Ameila H Bleeker, Markus A Kobold, Katrina M Waters, Thomas O Metz, Karin D Rodland, Bobbie-Jo M Webb-Robertson

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Lisa M BramerComputing & Analytics Division , Pacific Northwest National Laboratory , 902 Battelle Boulevard , Richland , Washington 99352 , United States.ORCID 0000-0002-8384-1926
Kelly G StrattonComputing & Analytics Division , Pacific Northwest National Laboratory , 902 Battelle Boulevard , Richland , Washington 99352 , United States.ORCID 0000-0002-1721-9688
Amanda M WhiteComputing & Analytics Division , Pacific Northwest National Laboratory , 902 Battelle Boulevard , Richland , Washington 99352 , United States.
Ameila H BleekerComputing & Analytics Division , Pacific Northwest National Laboratory , 902 Battelle Boulevard , Richland , Washington 99352 , United States.
Markus A KoboldComputing & Analytics Division , Pacific Northwest National Laboratory , 902 Battelle Boulevard , Richland , Washington 99352 , United States.
Katrina M WatersBiological Sciences Division , Pacific Northwest National Laboratory , 902 Battelle Boulevard , Richland , Washington 99352 , United States.ORCID 0000-0003-4696-5396
Thomas O MetzBiological Sciences Division , Pacific Northwest National Laboratory , 902 Battelle Boulevard , Richland , Washington 99352 , United States.ORCID 0000-0001-6049-3968
Karin D RodlandBiological Sciences Division , Pacific Northwest National Laboratory , 902 Battelle Boulevard , Richland , Washington 99352 , United States.ORCID 0000-0001-7070-6541
Bobbie-Jo M Webb-RobertsonComputing & Analytics Division , Pacific Northwest National Laboratory , 902 Battelle Boulevard , Richland , Washington 99352 , United States.ORCID 0000-0002-4744-2397
Battelle · US

Funding

Interactive Informatics Resource for Research-driven Cancer ProteomicsU01CA184783 · NCI · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI WEBB-ROBERTSON, BOBBIE-JO MARY · 2014 to 2016
$1.3M
NCI NIH HHS U01 CA184783
6 · The paper itself

Abstract

The use of mass-spectrometry-based techniques for global protein profiling of biomedical or environmental experiments has become a major focus in research centered on biomarker discovery; however, one of the most important issues recently highlighted in the new era of omics data generation is the ability to perform analyses in a robust and reproducible manner. This has been hypothesized to be one of the issues hindering the ability of clinical proteomics to successfully identify clinical diagnostic and prognostic biomarkers of disease. P-Mart ( https://pmart.labworks.org ) is a new interactive web-based software environment that enables domain scientists to perform quality-control processing, statistics, and exploration of large-complex proteomics data sets without requiring statistical programming. P-Mart is developed in a manner that allows researchers to perform analyses via a series of modules, explore the results using interactive visualization, and finalize the analyses with a collection of output files documenting all stages of the analysis and a report to allow reproduction of the analysis.

Indexed as

BiomarkersSoftwareHumansInternetIonsMass SpectrometryPrognosisProteomicsBiomarkersIonsexploratory data analysisproteomicsreproducibilitysoftwarestatisticsvisualizationweb service

Identifiers

PMID30667224
PMCPMC7032029
OpenAlexW2911485367

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.