Evidence map›Paper›PMID 30666752›Full record

ArticleProtein science : a publication of the Protein Society2019

Investigation of a sugar N-formyltransferase from the plant pathogen Pantoea ananatis.

Daniel L Hofmeister, James B Thoden, Hazel M Holden

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Beneficial Effect and Potential Risk ofPlants (Basel, Switzerland) · 2022
    Review
  2. Article
  3. Article
  4. Review
  5. Biochemical analysis of a sugar 4,6-dehydratase from Acanthamoeba polyphaga Mimivirus.Protein science : a publication of the Protein Society · 2020
    Article
  6. Misannotations of the genes encoding sugar N-formyltransferases.Protein science : a publication of the Protein Society · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Daniel L HofmeisterDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin, 53706.
James B ThodenDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin, 53706.
Hazel M HoldenDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin, 53706.
University of Wisconsin System · USUniversity of Wisconsin–Madison · US

Funding

X-ray Studies of Sugar-Modifying EnzymesR01GM115921 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HOLDEN, HAZEL M. · 2016 to 2019
$1.4M
NIGMS NIH HHS R01 GM115921NIH HHS GM115921
6 · The paper itself

Abstract

Pantoea ananatis is a Gram-negative bacterium first recognized in 1928 as the causative agent of pineapple rot in the Philippines. Since then various strains of the organism have been implicated in the devastation of agriculturally important crops. Some strains, however, have been shown to function as non-pathogenic plant growth promoting organisms. To date, the factors that determine pathogenicity or lack thereof between the various strains are not well understood. All P. ananatis strains contain lipopolysaccharides, which differ with respect to the identities of their associated sugars. Given our research interest on the presence of the unusual sugar, 4-formamido-4,6-dideoxy-d-glucose, found on the lipopolysaccharides of Campylobacter jejuni and Francisella tularensis, we were curious as to whether other bacteria have the appropriate biosynthetic machinery to produce these unique carbohydrates. Four enzymes are typically required for their biosynthesis: a thymidylyltransferase, a 4,6-dehydratase, an aminotransferase, and an N-formyltransferase. Here, we report that the gene SAMN03097714_1080 from the P. ananatis strain NFR11 does, indeed, encode for an N-formyltransferase, hereafter referred to as PA1080c. Our kinetic analysis demonstrates that PA1080c displays classical Michaelis-Menten kinetics with dTDP-4-amino-4,6-dideoxy-d-glucose as the substrate and N

Indexed as

Biosynthetic PathwaysCrystallography, X-RayHydroxymethyl and Formyl TransferasesLipopolysaccharidesModels, MolecularPantoeaPlant DiseasesPlant ProteinsPlantsProtein ConformationSubstrate SpecificitySugarsHydroxymethyl and Formyl TransferasesLipopolysaccharidesPlant ProteinsSugars4-formamido-4,6-dideoxy-d-glucosebacterial sugar biosynthesislipopolysaccharideN-formyltransferaseO-antigenPantoea ananatis

Identifiers

PMID30666752
PMCPMC6423709
OpenAlexW2904417468

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.