Evidence map›Paper›PMID 30666393›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2019

Mapping the H2 resistance effective against Globodera pallida pathotype Pa1 in tetraploid potato.

Shona M Strachan, Miles R Armstrong, Amanpreet Kaur, Kathryn M Wright, Tze Yin Lim, Katie Baker, John Jones, Glenn Bryan, Vivian Blok, Ingo Hein

Abstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Resisting Potato Cyst Nematodes With Resistance.Frontiers in plant science · 2021
    Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Shona M StrachanThe James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK.
Miles R ArmstrongThe James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK.
Amanpreet KaurThe James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK.
Kathryn M WrightThe James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK.
Tze Yin LimThe James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK.
Katie BakerThe James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK.
John JonesThe James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK.
Glenn BryanThe James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK.
Vivian BlokThe James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK.
Ingo HeinThe James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK. Ingo.Hein@hutton.ac.uk.ORCID http://orcid.org/0000-0002-0128-2084

Funding

CANCER AND LEUKEMIA GROUP BU10CA008025 · NCI · RHODE ISLAND HOSPITAL (PROVIDENCE, RI) · PI SIKOV, WILLIAM M · 1985 to 2002
$305k
Biotechnology and Biological Sciences Research Council BB/K018299/1Biotechnology and Biological Sciences Research Council BB/L008025/1Biotechnology and Biological Sciences Research Council BB/S015663/1Scottish Government CRF/2009/SCRI/SOP 0929
6 · The paper itself

Abstract

key messageThe nematode resistance gene H2 was mapped to the distal end of chromosome 5 in tetraploid potato. The H2 resistance gene, introduced into cultivated potatoes from the wild diploid species Solanum multidissectum, confers a high level of resistance to the Pa1 pathotype of the potato cyst nematode Globodera pallida. A cross between tetraploid H2-containing breeding clone P55/7 and susceptible potato variety Picasso yielded an F1 population that segregated approximately 1:1 for the resistance phenotype, which is consistent with a single dominant gene in a simplex configuration. Using genome reduction methodologies RenSeq and GenSeq, the segregating F1 population enabled the genetic characterisation of the resistance through a bulked segregant analysis. A diagnostic RenSeq analysis of the parents confirmed that the resistance in P55/7 cannot be explained by previously characterised resistance genes. Only the variety Picasso contained functionally characterised disease resistance genes Rpi-R1, Rpi-R3a, Rpi-R3b variant, Gpa2 and Rx, which was independently confirmed through effector vacuum infiltration assays. RenSeq and GenSeq independently identified sequence polymorphisms linked to the H2 resistance on the top end of potato chromosome 5. Allele-specific KASP markers further defined the locus containing the H2 gene to a 4.7 Mb interval on the distal short arm of potato chromosome 5 and to positions that correspond to 1.4 MB and 6.1 MB in the potato reference genome.

Indexed as

Chromosome MappingTetraploidyAnimalsChromosome SegregationChromosomes, PlantCrosses, GeneticDisease ResistanceGenes, DominantGenes, PlantGenetic LociNLR ProteinsPlant DiseasesPolymorphism, Single NucleotideSolanum tuberosumTylenchoideaNLR Proteins

Identifiers

PMID30666393
PMCPMC6449323

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.