Evidence map›Paper›PMID 30666239›Full record

ArticleFrontiers in microbiology2018

Identification of Specific Oral and Gut Pathogens in Full Thickness Colon of Colitis Patients: Implications for Colon Motility.

Vasudevan Dinakaran, Sammed N Mandape, Kristina Shuba, Siddharth Pratap, Shruti S Sakhare, Mohammad Ali Tabatabai, Duane T Smoot, Cherae M Farmer-Dixon, Lakshmyya N Kesavalu, Samuel Evans Adunyah and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 2 pooled it
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 2 syntheses or guidelines pooled it, 75 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
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  8. Article
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  10. Article
  11. Article
  12. Observational
  13. Article
  14. Oral Microbiota Associated with Clinical Efficacy of Ustekinumab in Crohn's Disease.Endocrine, metabolic & immune disorders drug targets · 2025
    Article
  15. Review
  16. Virulence · 2024
    Article
  17. Article
  18. Review
  19. qPCR assay optimisation for a clinical study comparing oral health risk in Rett syndrome.European archives of paediatric dentistry : official journal of the European Academy of Paediatric Dentistry · 2024
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Vasudevan DinakaranDepartment of ODS & Research, School of Dentistry, Meharry Medical College, Nashville, TN, United States.
Sammed N MandapeBioinformatics Core, School of Graduate Studies/Research & School of Medicine, Meharry Medical College, Nashville, TN, United States.
Kristina ShubaDepartment of ODS & Research, School of Dentistry, Meharry Medical College, Nashville, TN, United States.
Siddharth PratapBioinformatics Core, School of Graduate Studies/Research & School of Medicine, Meharry Medical College, Nashville, TN, United States.
Shruti S SakhareBioinformatics Core, School of Graduate Studies/Research & School of Medicine, Meharry Medical College, Nashville, TN, United States.
Mohammad Ali TabatabaiDepartment of Public Health, School of Graduate Studies & Research, Meharry Medical College, Nashville, TN, United States.
Duane T SmootDepartment of Internal Medicine, Division of Gastroenterology & Hepatology, Meharry Medical College, Nashville, TN, United States.
Cherae M Farmer-DixonDepartment of ODS & Research, School of Dentistry, Meharry Medical College, Nashville, TN, United States.
Lakshmyya N KesavaluDepartment of Periodontology, College of Dentistry, University of Florida, Gainesville, FL, United States.
Samuel Evans AdunyahDepartment of Biochemistry, Cancer Biology, Neuroscience & Pharmacology, Meharry Medical College, Nashville, TN, United States.
Janet Hayes SoutherlandDepartment of Nutrition Metabolism & Oral Surgery, University of Texas Medical Branch at Galveston, Galveston, TX, United States.
Pandu R GangulaDepartment of ODS & Research, School of Dentistry, Meharry Medical College, Nashville, TN, United States.
Meharry Medical College · USThe University of Texas Medical Branch at Galveston · USUniversity of Florida · US

Funding

The RCMI Program in Health Disparities Research at Meharry Medical College - SupplementU54MD007586 · NIMHD · MEHARRY MEDICAL COLLEGE · PI Maureen Sanderson · 2017 to 2026
$48.2M
Technologies and Resources CoreU54MD007593 · NIMHD · MEHARRY MEDICAL COLLEGE · PI ADUNYAH, SAMUEL EVANS · 2012 to 2018
$24.7M
Translational Pathology CoreU54CA163069 · NCI · MEHARRY MEDICAL COLLEGE · PI BALLARD, BILLY RAY · 2011 to 2025
$18.8M
Meharry RCMI Program in Women's Health ResearchG12MD007586 · NIMHD · MEHARRY MEDICAL COLLEGE · PI HILDRETH, JAMES E · 2012 to 2016
$7.8M
ROLE OF NRF2 IN NITRERGIC MEDIAITED STOMACH MOTILITYSC1GM121282 · NIGMS · MEHARRY MEDICAL COLLEGE · PI GANGULA, PANDU R · 2017 to 2020
$1.4M
NCI NIH HHS U54 CA163069NIGMS NIH HHS SC1 GM121282NIMHD NIH HHS G12 MD007586NIMHD NIH HHS U54 MD007586NIMHD NIH HHS U54 MD007593
6 · The paper itself

Abstract

Impaired colon motility is one of the leading problems associated with inflammatory bowel disease (IBD). An expanding body of evidence supports the role of microbiome in normal gut function and in progression of IBD. The objective of this work is to determine whether diseased full thickness colon specimens, including the neuromuscular region (critical for colon motility function), contain specific oral and gut pathogens. In addition, we compared the differences in colon microbiome between Caucasians (CA) and African Americans (AA). Thirty-nine human full thickness colon (diseased colon and adjacent healthy colon) specimens were collected from Crohn's Colitis (CC) or Ulcerative Colitis (UC) patients while they underwent elective colon surgeries. We isolated and analyzed bacterial ribosomal RNA (rRNA) from colon specimens by amplicon sequencing of the 16S rRNA gene region. The microbiome proportions were quantified into Operational Taxonomic Units (OTUs) by analysis with Quantitative Insights Into Microbial ecology (QIIME) platform. Two hundred twenty-eight different bacterial species were identified by QIIME analysis. However, we could only decipher the species name of fifty-three bacteria. Our results show that proportion of non-detrimental bacteria in CC or UC colon samples were altered compared to adjacent healthy colon specimens. We further show, for the first time in full thickness colon specimens, that microbiome of CC and UC diseased specimens is dominated by putative oral pathogens belonging to the Phyla Firmicutes (

Indexed as

antioxidantscolitiscolon motilitygut microbiomenitric oxide (NO)operational taxonomic units (OTUs)oral microbiome

Identifiers

PMID30666239
PMCPMC6330997
OpenAlexW2907796140

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.