Evidence map›Paper›PMID 30665944›Full record

ArticleEMBO reports2019

Splicing factor

Yesim Gökmen-Polar, Yaseswini Neelamraju, Chirayu P Goswami, Yuan Gu, Xiaoping Gu, Gouthami Nallamothu, Edyta Vieth, Sarath C Janga, Michael Ryan, Sunil S Badve

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 81 citations in OpenAlex.

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  11. ESRP1 exerts anti-tumor role by promoting ferroptosis in diffuse-type gastric cancer.Journal of experimental & clinical cancer research : CR · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Yesim Gökmen-PolarDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA ypolar@iu.edu sbadve@iupui.edu.ORCID 0000-0001-9927-4893
Yaseswini NeelamrajuDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA, USA.
Chirayu P GoswamiDepartment of Bioinformatics, Thomas Jefferson University Hospitals, Philadelphia, PA, USA.
Yuan GuDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
Xiaoping GuDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
Gouthami NallamothuDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
Edyta ViethDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
Sarath C JangaDepartment of BioHealth Informatics, School of Informatics and Computing, IUPUI, Indianapolis, IN, USA.ORCID 0000-0001-7351-6268
Michael RyanDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Sunil S BadveDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA ypolar@iu.edu sbadve@iupui.edu.ORCID 0000-0001-8861-9980
Indiana University School of MedicineIndiana University Health · USThe University of Texas MD Anderson Cancer Center · USThomas Jefferson University Hospital · USUniversity of Virginia · US

Funding

Mapping RNA protein interaction networks in the human genomeR01GM123314 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI JANGA, SARATH CHANDRA · 2017 to 2021
$1.7M
NIGMS NIH HHS R01 GM123314
6 · The paper itself

Abstract

The epithelial splicing regulatory proteins 1 and 2 (ESRP1 and ESRP2) control the epithelial-to-mesenchymal transition (EMT) splicing program in cancer. However, their role in breast cancer recurrence is unclear. In this study, we report that high levels of ESRP1, but not ESRP2, are associated with poor prognosis in estrogen receptor positive (ER+) breast tumors. Knockdown of ESRP1 in endocrine-resistant breast cancer models decreases growth significantly and alters the EMT splicing signature, which we confirm using TCGA SpliceSeq data of ER+ BRCA tumors. However, these changes are not accompanied by the development of a mesenchymal phenotype or a change in key EMT-transcription factors. In tamoxifen-resistant cells, knockdown of ESRP1 affects lipid metabolism and oxidoreductase processes, resulting in the decreased expression of fatty acid synthase (FASN), stearoyl-CoA desaturase 1 (SCD1), and phosphoglycerate dehydrogenase (PHGDH) at both the mRNA and protein levels. Furthermore, ESRP1 knockdown increases the basal respiration and spare respiration capacity. This study reports a novel role for ESRP1 that could form the basis for the prevention of tamoxifen resistance in ER+ breast cancer.

Indexed as

Energy MetabolismMetabolic Networks and PathwaysAlternative SplicingAntineoplastic AgentsBreast NeoplasmsCell Line, TumorEpithelial-Mesenchymal TransitionFemaleGene Expression Regulation, NeoplasticGene Knockdown TechniquesHumansProportional Hazards ModelsReceptors, EstrogenRNA-Binding ProteinsRNA Splicing FactorsAntineoplastic AgentsESRP1 protein, humanReceptors, EstrogenRNA-Binding ProteinsRNA Splicing Factorsalternative splicingER‐positive breast cancerESRP1fatty acid metabolismHTA

Identifiers

PMID30665944
PMCPMC6362360
OpenAlexW2909868821

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.