Evidence map›Paper›PMID 30665414›Full record

ArticleBMC genomics2019

The Anaplasma ovis genome reveals a high proportion of pseudogenes.

Zhijie Liu, Austin M Peasley, Jifei Yang, Youquan Li, Guiquan Guan, Jianxun Luo, Hong Yin, Kelly A Brayton

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.2field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

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  12. First Whole Genome Sequence ofPathogens (Basel, Switzerland) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Zhijie LiuState Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, People's Republic of China.
Austin M PeasleyProgram in Genomics, Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, WA, 99164-7040, USA.
Jifei YangState Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, People's Republic of China.
Youquan LiState Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, People's Republic of China.
Guiquan GuanState Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, People's Republic of China.
Jianxun LuoState Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, People's Republic of China.
Hong YinState Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, People's Republic of China.
Kelly A BraytonProgram in Genomics, Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, WA, 99164-7040, USA. kbrayton@wsu.edu.ORCID http://orcid.org/0000-0001-7077-5424
Lanzhou Veterinary Research Institute · CNWashington State University · US

Funding

973 Program 2010CB530206973 Program 2015CB150300Agricultural Science and Technology Innovation Program CAAS-ASTIP-2016-LVRIJiangsu Co-innovation Center Program for Prevention and Control of Important Animal Infectious Diseases and Zoonoses -National Beef Cattle Industrial Technology System CARS-37National Key Research and Development Program of China 2016YFC1202000National Key Research and Development Program of China 2016YFC1202002National Key Research and Development Program of China 2017YFD0500904National Key Research and Development Program of China 2017YFD0501200National Key Research and Development Program of China 2017YFD0502304National Natural Science Foundation of China 31502091
6 · The paper itself

Abstract

backgroundThe genus Anaplasma is made up of organisms characterized by small genomes that are undergoing reductive evolution. Anaplasma ovis, one of the seven recognized species in this genus, is an understudied pathogen of sheep and other ruminants. This tick-borne agent is thought to induce only mild clinical disease; however, small deficits may add to larger economic impacts due to the wide geographic distribution of this pathogen.

resultsIn this report we present the first complete genome sequence for A. ovis and compare the genome features with other closely related species. The 1,214,674 bp A. ovis genome encodes 933 protein coding sequences, the split operon arrangement for ribosomal RNA genes, and more pseudogenes than previously recognized for other Anaplasma species. The metabolic potential is similar to other Anaplasma species. Anaplasma ovis has a small repertoire of surface proteins and transporters. Several novel genes are identified.

conclusionsAnalyses of these important features and significant gene families/genes with potential to be vaccine candidates are presented in a comparative context. The availability of this genome will significantly facilitate research for this pathogen.

Indexed as

Genome, BacterialPseudogenesAmino Acid MotifsAnaplasma ovisBacterial ProteinsGenomicsMembrane ProteinsMembrane Transport ProteinsMultigene FamilyBacterial ProteinsMembrane ProteinsMembrane Transport ProteinsComparative genomicsDiagnostic assayGenome sequenceRickettsial pathogenVaccine development

Identifiers

PMID30665414
PMCPMC6341658
OpenAlexW2915195460

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.