Evidence map›Paper›PMID 30665365›Full record

ArticleBMC plant biology2019

Comparative transcriptome analysis reveals gene network regulating cadmium uptake and translocation in peanut roots under iron deficiency.

Chu Chen, Qiqi Cao, Qun Jiang, Jin Li, Rugang Yu, Gangrong Shi

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
7.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

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3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 52 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Chu ChenCollege of Life Sciences, Huaibei Normal University, Huaibei, Anhui, 235000, People's Republic of China.
Qiqi CaoCollege of Life Sciences, Huaibei Normal University, Huaibei, Anhui, 235000, People's Republic of China.
Qun JiangCollege of Life Sciences, Huaibei Normal University, Huaibei, Anhui, 235000, People's Republic of China.
Jin LiCollege of Life Sciences, Huaibei Normal University, Huaibei, Anhui, 235000, People's Republic of China.
Rugang YuCollege of Life Sciences, Huaibei Normal University, Huaibei, Anhui, 235000, People's Republic of China.
Gangrong ShiCollege of Life Sciences, Huaibei Normal University, Huaibei, Anhui, 235000, People's Republic of China. swsgr@126.com.
Huaibei Normal University · CN

Funding

Innovation Team of Scientific Research Platform of Anhui Province KJ2015TD001Natural Science Foundation of China 31671599
6 · The paper itself

Abstract

backgroundIron (Fe) is an essential element for plant growth and development, whereas cadmium (Cd) is non-essential and highly toxic. Previous studies showed that Fe deficiency enhanced Cd uptake and accumulation in peanuts. However, the molecular mechanism underlying the increased Cd accumulation in Fe-deficient peanut plants is poorly understood.

resultsWe employed a comparative transcriptome analysis approach to identify differentially expressed genes (DEGs) in peanut roots exposed to Fe-sufficient without Cd, Fe-deficient without Cd, Fe-sufficient with Cd and Fe-deficient with Cd. Compared with the control, Fe deficiency induced 465 up-regulated and 211 down-regulated DEGs, whereas the up- and down-regulated DEGs in Cd exposed plants were 329 and 189, respectively. Under Fe-deficient conditions, Cd exposure resulted in 907 up-regulated DEGs and 953 down-regulated DEGs. In the presence of Cd, Fe deficiency induced 1042 up-regulated and 847 down-regulated genes, respectively. Based on our array data, we found that metal transporter genes such as CAX4, COPT1, IRT1, NRAMP5, OPT3, YSL3, VIT3 and VIT4 might be involved in iron homeostasis. Moreover, combined with quantitative real-time PCR, IRT1, NRAMP3, NRAMP5, OPT3, YSL3, ABCC3, ZIP1, and ZIP5 were verified to be responsible for Cd uptake and translocation in peanut plants under iron deficiency. Additionally, a larger amount of ABC transporter genes was induced or suppressed by iron deficiency under Cd exposure, indicating that this family may play important roles in Fe/Cd uptake and transport.

conclusionsThe up-regulated expression of NRAMP5 and IRT1 genes induced by iron deficiency may enhance Cd uptake in peanut roots. The decrease of Cd translocation from roots to shoots may be resulted from the down-regulation of ZIP1, ZIP5 and YSL3 under iron deficiency.

Indexed as

CadmiumGene Expression Regulation, PlantGene Regulatory NetworksIronPlant RootsTranscriptomeCadmiumIronCadmiumGene expressionIron deficiencyPeanutTranscriptome

Identifiers

PMID30665365
PMCPMC6341601
OpenAlexW2910789688

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.