Evidence map›Paper›PMID 30665182›Full record

ArticleMolecular therapy. Nucleic acids2019

Posttranscriptional Regulation of 14q32 MicroRNAs by the CIRBP and HADHB during Vascular Regeneration after Ischemia.

Angela Downie Ruiz Velasco, Sabine M J Welten, Eveline A C Goossens, Paul H A Quax, Juri Rappsilber, Gracjan Michlewski, A Yaël Nossent

Open access · goldAbstract read
In one paragraph

Article in Molecular therapy. Nucleic acids, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  8. Arteriogenesis and Therapeutic Angiogenesis-An Update.International journal of molecular sciences · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. MicroRNAs: From Mechanism to Organism.Frontiers in cell and developmental biology · 2020
    Review
  16. Review
  17. Article
  18. MicroRNA regulation of vascular function.Vascular biology (Bristol, England) · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 5 countries.

Angela Downie Ruiz VelascoDivision of Infection and Pathway Medicine, University of Edinburgh, The Chancellor's Building, Edinburgh, UK; The Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh, UK.
Sabine M J WeltenDepartment of Surgery, Leiden University Medical, Leiden, the Netherlands; Einthoven Laboratory for Experimental Vascular Medicine, Leiden University Medical, Leiden, the Netherlands.
Eveline A C GoossensDepartment of Surgery, Leiden University Medical, Leiden, the Netherlands; Einthoven Laboratory for Experimental Vascular Medicine, Leiden University Medical, Leiden, the Netherlands.
Paul H A QuaxDepartment of Surgery, Leiden University Medical, Leiden, the Netherlands; Einthoven Laboratory for Experimental Vascular Medicine, Leiden University Medical, Leiden, the Netherlands.
Juri RappsilberThe Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh, UK; Department of Biotechnology, Technische Universität Berlin, Berlin, Germany.
Gracjan MichlewskiDivision of Infection and Pathway Medicine, University of Edinburgh, The Chancellor's Building, Edinburgh, UK; The Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh, UK; Zhejiang University - University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University, Haining, Zhejiang, P.R. China. Electronic address: gracjan.michlewski@ed.ac.uk.
A Yaël NossentDepartment of Surgery, Leiden University Medical, Leiden, the Netherlands; Einthoven Laboratory for Experimental Vascular Medicine, Leiden University Medical, Leiden, the Netherlands; Ludwig Boltzmann Cluster for Cardiovascular Research, Vienna, Austria. Electronic address: a.y.nossent@lumc.nl.
Leiden University · NLLeiden University Medical Center · NLUniversity of Edinburgh · GBWellcome Centre for Cell Biology · GBZhejiang University-University of Edinburgh Institute · CN

Funding

Medical Research Council G1000564Wellcome Trust 084229Wellcome Trust 103139/Z/13/Z
6 · The paper itself

Abstract

After induction of ischemia in mice, 14q32 microRNAs are regulated in three distinct temporal patterns. These expression patterns, as well as basal expression levels, are independent of the microRNA genes' order in the 14q32 locus. This implies that posttranscriptional processing is a major determinant of 14q32 microRNA expression. Therefore, we hypothesized that RNA binding proteins (RBPs) regulate posttranscriptional processing of 14q32, and we aimed to identify these RBPs. To identify proteins responsible for this posttranscriptional regulation, we used RNA pull-down SILAC mass spectrometry (RP-SMS) on selected precursor microRNAs. We observed differential binding of cold-inducible RBP (CIRBP) and hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta (HADHB) to the precursors of late-upregulated miR-329-3p and unaffected miR-495-3p. Immunohistochemical staining confirmed expression of both CIRBP and HADHB in the adductor muscle of mice. Expression of both CIRBP and HADHB was upregulated after hindlimb ischemia in mice. Using RBP immunoprecipitation experiments, we showed specific binding of CIRBP to pre-miR-329 but not to pri-miR-329. Finally, using CRISPR/Cas9, we generated HADHB

Indexed as

14q32CIRBPHADHBhindlimb ischemia modelischemiamicroRNAmicroRNA clustermiR-329miR-495RNA binding proteins

Identifiers

PMID30665182
PMCPMC6350214
OpenAlexW2904140588

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.